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Sample GSM1267996 Query DataSets for GSM1267996
Status Public on Dec 04, 2014
Title Lung tissue from cigarette smoke-treated mice at 4 months of age, biological replicate 3
Sample type RNA
Source name Lung tissue
Organism Mus musculus
Characteristics strain: C57BL/6N
gender: female
tissue: lung
treatment: cigarette smoke-treated
age: 4 m
Treatment protocol Exposure to cigarette smoke as described in the paper
Growth protocol Animals housed under spf conditions
Extracted molecule total RNA
Extraction protocol RNeasy Mini Kit (Qiagen) including DNase treatment
Label Biotin
Label protocol Illumina TotalPrep RNA Amplification kit (Ambion)
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Gene expression data from lung tissue from cigarette smoke-treated mice at 4 months of age, biological replicate 3
Data processing Data including background subtraction (GenomeStudioV2011.1 software, gene expression module version 1.9.0), removal of negative values by introducing an offset, quantile normalisation
Submission date Nov 19, 2013
Last update date Dec 04, 2014
Contact name Johannes Beckers
Organization name Helmholtz Zentrum Muenchen
Department Institute of Experimental Genetics
Street address Ingolstaedter Landstr. 1
City Neuherberg
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE52509 Cigarette smoke-induced iBALT mediates macrophage activation in a B cell-dependent manner in COPD

Data table header descriptions
VALUE quantile normalized signal
Smoke_4m_3.Detection Pval

Data table
ID_REF VALUE Smoke_4m_3.Detection Pval
ILMN_1212607 37 0.1090226
ILMN_1212612 140 0
ILMN_1212619 57 0
ILMN_1212628 35 0.1754386
ILMN_1212632 55 0
ILMN_1212636 1061 0
ILMN_1212637 679 0
ILMN_1212645 29 0.5062656
ILMN_1212648 147 0
ILMN_1212653 333 0
ILMN_1212672 133 0
ILMN_1212682 27 0.6102757
ILMN_1212683 22 0.8972431
ILMN_1212685 29 0.4298246
ILMN_1212692 150 0
ILMN_1212693 239 0
ILMN_1212695 45 0.02130326
ILMN_1212698 13 0.9974937
ILMN_1212702 27002 0
ILMN_1212703 77 0

Total number of rows: 25697

Table truncated, full table size 569 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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