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Sample GSM1267997 Query DataSets for GSM1267997
Status Public on Dec 04, 2014
Title Lung tissue from control mice at 4 months of age, biological replicate 1
Sample type RNA
Source name Lung tissue
Organism Mus musculus
Characteristics strain: C57BL/6N
gender: female
tissue: lung
treatment: control
age: 4 m
Treatment protocol Exposure to cigarette smoke as described in the paper
Growth protocol Animals housed under spf conditions
Extracted molecule total RNA
Extraction protocol RNeasy Mini Kit (Qiagen) including DNase treatment
Label Biotin
Label protocol Illumina TotalPrep RNA Amplification kit (Ambion)
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Gene expression data from lung tissue from control mice at 4 months of age, biological replicate 1
Data processing Data including background subtraction (GenomeStudioV2011.1 software, gene expression module version 1.9.0), removal of negative values by introducing an offset, quantile normalisation
Submission date Nov 19, 2013
Last update date Dec 04, 2014
Contact name Johannes Beckers
Organization name Helmholtz Zentrum Muenchen
Department Institute of Experimental Genetics
Street address Ingolstaedter Landstr. 1
City Neuherberg
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE52509 Cigarette smoke-induced iBALT mediates macrophage activation in a B cell-dependent manner in COPD

Data table header descriptions
VALUE quantile normalized signal
Ctrl_4m_1.Detection Pval

Data table
ID_REF VALUE Ctrl_4m_1.Detection Pval
ILMN_1212607 29 0.4486215
ILMN_1212612 143 0
ILMN_1212619 43 0.03132832
ILMN_1212628 37 0.1077694
ILMN_1212632 41 0.03884712
ILMN_1212636 894 0
ILMN_1212637 534 0
ILMN_1212645 39 0.07393484
ILMN_1212648 165 0
ILMN_1212653 389 0
ILMN_1212672 127 0
ILMN_1212682 33 0.2681704
ILMN_1212683 31 0.368421
ILMN_1212685 30 0.4010025
ILMN_1212692 178 0
ILMN_1212693 305 0
ILMN_1212695 38 0.09022556
ILMN_1212698 19 0.9385965
ILMN_1212702 27786 0
ILMN_1212703 65 0

Total number of rows: 25697

Table truncated, full table size 576 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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