NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1267998 Query DataSets for GSM1267998
Status Public on Dec 04, 2014
Title Lung tissue from control mice at 4 months of age, biological replicate 2
Sample type RNA
 
Source name Lung tissue
Organism Mus musculus
Characteristics strain: C57BL/6N
gender: female
tissue: lung
treatment: control
age: 4 m
Treatment protocol Exposure to cigarette smoke as described in the paper
Growth protocol Animals housed under spf conditions
Extracted molecule total RNA
Extraction protocol RNeasy Mini Kit (Qiagen) including DNase treatment
Label Biotin
Label protocol Illumina TotalPrep RNA Amplification kit (Ambion)
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Gene expression data from lung tissue from control mice at 4 months of age, biological replicate 2
Data processing Data including background subtraction (GenomeStudioV2011.1 software, gene expression module version 1.9.0), removal of negative values by introducing an offset, quantile normalisation
 
Submission date Nov 19, 2013
Last update date Dec 04, 2014
Contact name Johannes Beckers
E-mail(s) beckers@helmholtz-muenchen.de
Organization name Helmholtz Zentrum Muenchen
Department Institute of Experimental Genetics
Street address Ingolstaedter Landstr. 1
City Neuherberg
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL6885
Series (1)
GSE52509 Cigarette smoke-induced iBALT mediates macrophage activation in a B cell-dependent manner in COPD

Data table header descriptions
ID_REF
VALUE quantile normalized signal
Ctrl_4m_2.Detection Pval

Data table
ID_REF VALUE Ctrl_4m_2.Detection Pval
ILMN_1212607 33 0.2593985
ILMN_1212612 178 0
ILMN_1212619 58 0
ILMN_1212628 26 0.6541353
ILMN_1212632 45 0.02506266
ILMN_1212636 913 0
ILMN_1212637 628 0
ILMN_1212645 24 0.8107769
ILMN_1212648 176 0
ILMN_1212653 404 0
ILMN_1212672 149 0
ILMN_1212682 31 0.3333333
ILMN_1212683 28 0.5551379
ILMN_1212685 27 0.6441103
ILMN_1212692 137 0
ILMN_1212693 379 0
ILMN_1212695 27 0.6052632
ILMN_1212698 28 0.5626566
ILMN_1212702 27786 0
ILMN_1212703 73 0

Total number of rows: 25697

Table truncated, full table size 570 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap