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Sample GSM1267999 Query DataSets for GSM1267999
Status Public on Dec 04, 2014
Title Lung tissue from control mice at 4 months of age, biological replicate 3
Sample type RNA
 
Source name Lung tissue
Organism Mus musculus
Characteristics strain: C57BL/6N
gender: female
tissue: lung
treatment: control
age: 4 m
Treatment protocol Exposure to cigarette smoke as described in the paper
Growth protocol Animals housed under spf conditions
Extracted molecule total RNA
Extraction protocol RNeasy Mini Kit (Qiagen) including DNase treatment
Label Biotin
Label protocol Illumina TotalPrep RNA Amplification kit (Ambion)
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Gene expression data from lung tissue from control mice at 4 months of age, biological replicate 3
Data processing Data including background subtraction (GenomeStudioV2011.1 software, gene expression module version 1.9.0), removal of negative values by introducing an offset, quantile normalisation
 
Submission date Nov 19, 2013
Last update date Dec 04, 2014
Contact name Johannes Beckers
E-mail(s) beckers@helmholtz-muenchen.de
Organization name Helmholtz Zentrum Muenchen
Department Institute of Experimental Genetics
Street address Ingolstaedter Landstr. 1
City Neuherberg
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL6885
Series (1)
GSE52509 Cigarette smoke-induced iBALT mediates macrophage activation in a B cell-dependent manner in COPD

Data table header descriptions
ID_REF
VALUE quantile normalized signal
Ctrl_4m_3.Detection Pval

Data table
ID_REF VALUE Ctrl_4m_3.Detection Pval
ILMN_1212607 23 0.8308271
ILMN_1212612 149 0
ILMN_1212619 60 0
ILMN_1212628 34 0.197995
ILMN_1212632 54 0.001253133
ILMN_1212636 992 0
ILMN_1212637 534 0
ILMN_1212645 31 0.320802
ILMN_1212648 155 0
ILMN_1212653 457 0
ILMN_1212672 146 0
ILMN_1212682 29 0.4561403
ILMN_1212683 23 0.849624
ILMN_1212685 21 0.8809524
ILMN_1212692 137 0
ILMN_1212693 274 0
ILMN_1212695 32 0.2744361
ILMN_1212698 14 0.9937344
ILMN_1212702 27002 0
ILMN_1212703 70 0

Total number of rows: 25697

Table truncated, full table size 572 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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