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Sample GSM1268001 Query DataSets for GSM1268001
Status Public on Dec 04, 2014
Title Lung tissue from cigarette smoke-treated mice at 6 months of age, biological replicate 2
Sample type RNA
Source name Lung tissue
Organism Mus musculus
Characteristics strain: C57BL/6N
gender: female
tissue: lung
treatment: cigarette smoke-treated
age: 6 m
Treatment protocol Exposure to cigarette smoke as described in the paper
Growth protocol Animals housed under spf conditions
Extracted molecule total RNA
Extraction protocol RNeasy Mini Kit (Qiagen) including DNase treatment
Label Biotin
Label protocol Illumina TotalPrep RNA Amplification kit (Ambion)
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Gene expression data from lung tissue from cigarette smoke-treated mice at 6 months of age, biological replicate 2
Data processing Data including background subtraction (GenomeStudioV2011.1 software, gene expression module version 1.9.0), removal of negative values by introducing an offset, quantile normalisation
Submission date Nov 19, 2013
Last update date Dec 04, 2014
Contact name Johannes Beckers
Organization name Helmholtz Zentrum Muenchen
Department Institute of Experimental Genetics
Street address Ingolstaedter Landstr. 1
City Neuherberg
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE52509 Cigarette smoke-induced iBALT mediates macrophage activation in a B cell-dependent manner in COPD

Data table header descriptions
VALUE quantile normalized signal
Smoke_6m_2.Detection Pval

Data table
ID_REF VALUE Smoke_6m_2.Detection Pval
ILMN_1212607 31 0.3809524
ILMN_1212612 136 0
ILMN_1212619 66 0
ILMN_1212628 42 0.02506266
ILMN_1212632 43 0.02506266
ILMN_1212636 1060 0
ILMN_1212637 486 0
ILMN_1212645 24 0.8032581
ILMN_1212648 176 0
ILMN_1212653 270 0
ILMN_1212672 119 0
ILMN_1212682 30 0.4185464
ILMN_1212683 28 0.5902256
ILMN_1212685 27 0.6265664
ILMN_1212692 198 0
ILMN_1212693 223 0
ILMN_1212695 38 0.06641604
ILMN_1212698 18 0.9674186
ILMN_1212702 26036 0
ILMN_1212703 82 0

Total number of rows: 25697

Table truncated, full table size 572 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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