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Sample GSM1268003 Query DataSets for GSM1268003
Status Public on Dec 04, 2014
Title Lung tissue from control mice at 6 months of age, biological replicate 1
Sample type RNA
 
Source name Lung tissue
Organism Mus musculus
Characteristics strain: C57BL/6N
gender: female
tissue: lung
treatment: control
age: 6 m
Treatment protocol Exposure to cigarette smoke as described in the paper
Growth protocol Animals housed under spf conditions
Extracted molecule total RNA
Extraction protocol RNeasy Mini Kit (Qiagen) including DNase treatment
Label Biotin
Label protocol Illumina TotalPrep RNA Amplification kit (Ambion)
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Gene expression data from lung tissue from control mice at 6 months of age, biological replicate 1
Data processing Data including background subtraction (GenomeStudioV2011.1 software, gene expression module version 1.9.0), removal of negative values by introducing an offset, quantile normalisation
 
Submission date Nov 19, 2013
Last update date Dec 04, 2014
Contact name Johannes Beckers
E-mail(s) beckers@helmholtz-muenchen.de
Organization name Helmholtz Zentrum Muenchen
Department Institute of Experimental Genetics
Street address Ingolstaedter Landstr. 1
City Neuherberg
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL6885
Series (1)
GSE52509 Cigarette smoke-induced iBALT mediates macrophage activation in a B cell-dependent manner in COPD

Data table header descriptions
ID_REF
VALUE quantile normalized signal
Ctrl_6m_1.Detection Pval

Data table
ID_REF VALUE Ctrl_6m_1.Detection Pval
ILMN_1212607 36 0.141604
ILMN_1212612 125 0
ILMN_1212619 55 0.002506266
ILMN_1212628 34 0.1954887
ILMN_1212632 49 0.007518797
ILMN_1212636 936 0
ILMN_1212637 550 0
ILMN_1212645 31 0.3634085
ILMN_1212648 157 0
ILMN_1212653 484 0
ILMN_1212672 109 0
ILMN_1212682 30 0.4085213
ILMN_1212683 26 0.697995
ILMN_1212685 24 0.8233083
ILMN_1212692 156 0
ILMN_1212693 253 0
ILMN_1212695 31 0.339599
ILMN_1212698 18 0.9461153
ILMN_1212702 27002 0
ILMN_1212703 75 0

Total number of rows: 25697

Table truncated, full table size 573 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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