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Sample GSM1268005 Query DataSets for GSM1268005
Status Public on Dec 04, 2014
Title Lung tissue from control mice at 6 months of age, biological replicate 3
Sample type RNA
Source name Lung tissue
Organism Mus musculus
Characteristics strain: C57BL/6N
gender: female
tissue: lung
treatment: control
age: 6 m
Treatment protocol Exposure to cigarette smoke as described in the paper
Growth protocol Animals housed under spf conditions
Extracted molecule total RNA
Extraction protocol RNeasy Mini Kit (Qiagen) including DNase treatment
Label Biotin
Label protocol Illumina TotalPrep RNA Amplification kit (Ambion)
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Gene expression data from lung tissue from control mice at 6 months of age, biological replicate 3
Data processing Data including background subtraction (GenomeStudioV2011.1 software, gene expression module version 1.9.0), removal of negative values by introducing an offset, quantile normalisation
Submission date Nov 19, 2013
Last update date Dec 04, 2014
Contact name Johannes Beckers
Organization name Helmholtz Zentrum Muenchen
Department Institute of Experimental Genetics
Street address Ingolstaedter Landstr. 1
City Neuherberg
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE52509 Cigarette smoke-induced iBALT mediates macrophage activation in a B cell-dependent manner in COPD

Data table header descriptions
VALUE quantile normalized signal
Ctrl_6m_3.Detection Pval

Data table
ID_REF VALUE Ctrl_6m_3.Detection Pval
ILMN_1212607 28 0.5789474
ILMN_1212612 171 0
ILMN_1212619 64 0
ILMN_1212628 38 0.1052632
ILMN_1212632 62 0.001253133
ILMN_1212636 909 0
ILMN_1212637 484 0
ILMN_1212645 28 0.537594
ILMN_1212648 165 0
ILMN_1212653 455 0
ILMN_1212672 133 0
ILMN_1212682 28 0.556391
ILMN_1212683 21 0.9085213
ILMN_1212685 25 0.7756892
ILMN_1212692 152 0
ILMN_1212693 258 0
ILMN_1212695 31 0.3245614
ILMN_1212698 18 0.9423559
ILMN_1212702 27786 0
ILMN_1212703 75 0

Total number of rows: 25697

Table truncated, full table size 577 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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