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Sample GSM1269619 Query DataSets for GSM1269619
Status Public on Dec 05, 2013
Title BS2011051053
Sample type RNA
 
Source name Gastrocnemius muscle mRNA from young (10 week old) wild-type mice
Organism Mus musculus
Characteristics tissue: Gastrocnemius muscle
genotype: WT
age: YOUNG
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol standard Affymetrix procedure.
Scan protocol standard Affymetrix procedure.
Description Gene expression data of gastrocnemius muscle mRNA from young (10 week old) wild-type mice
Data processing The data were analyzed with RMA (log2) normalized data using the just.rma function in the affy package in Biocinductor
 
Submission date Nov 20, 2013
Last update date Dec 05, 2013
Contact name Benjamin Haibe-Kains
E-mail(s) benjamin.haibe.kains@utoronto.ca
Phone +14165818626
Organization name Princess Margaret Cancer Centre
Department Princess Margaret Research
Lab Bioinformatics and Computational Genomics
Street address 610 University Avenue
City Toronto
State/province Ontario
ZIP/Postal code M5G 2M9
Country Canada
 
Platform ID GPL1261
Series (1)
GSE52550 Progressive loss of PGC-1alpha expression in aging muscle potentiates glucose intolerance and systemic inflammation

Data table header descriptions
ID_REF
VALUE RMA (log2) expression values

Data table
ID_REF VALUE
1415670_at 9.30863983040109
1415671_at 10.6140207024698
1415672_at 11.5732605870582
1415673_at 8.5885816149204
1415674_a_at 9.35813834790513
1415675_at 8.3939095730222
1415676_a_at 12.6247559627045
1415677_at 9.57542215177861
1415678_at 12.5101089229846
1415679_at 12.412674812281
1415680_at 8.6773428086643
1415681_at 10.7822728891954
1415682_at 9.4710935632281
1415683_at 11.2581710695302
1415684_at 9.08236822099589
1415685_at 10.4206263700877
1415686_at 10.6097328044082
1415687_a_at 13.1472682735108
1415688_at 13.1048202425914
1415689_s_at 9.41101658884427

Total number of rows: 45101

Table truncated, full table size 1246 Kbytes.




Supplementary file Size Download File type/resource
GSM1269619_BS2011051053.CEL.gz 4.0 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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