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Sample GSM1269620 Query DataSets for GSM1269620
Status Public on Dec 05, 2013
Title BS2011051054_2
Sample type RNA
 
Source name Gastrocnemius muscle mRNA from young (10 week old) wild-type mice
Organism Mus musculus
Characteristics tissue: Gastrocnemius muscle
genotype: WT
age: YOUNG
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol standard Affymetrix procedure.
Scan protocol standard Affymetrix procedure.
Description Gene expression data of gastrocnemius muscle mRNA from young (10 week old) wild-type mice
Data processing The data were analyzed with RMA (log2) normalized data using the just.rma function in the affy package in Biocinductor
 
Submission date Nov 20, 2013
Last update date Dec 05, 2013
Contact name Benjamin Haibe-Kains
E-mail(s) benjamin.haibe.kains@utoronto.ca
Phone +14165818626
Organization name Princess Margaret Cancer Centre
Department Princess Margaret Research
Lab Bioinformatics and Computational Genomics
Street address 610 University Avenue
City Toronto
State/province Ontario
ZIP/Postal code M5G 2M9
Country Canada
 
Platform ID GPL1261
Series (1)
GSE52550 Progressive loss of PGC-1alpha expression in aging muscle potentiates glucose intolerance and systemic inflammation

Data table header descriptions
ID_REF
VALUE RMA (log2) expression values

Data table
ID_REF VALUE
1415670_at 9.24785218873305
1415671_at 10.6322553507953
1415672_at 11.4524859753342
1415673_at 8.53442124062917
1415674_a_at 9.42448815599833
1415675_at 8.21075250811861
1415676_a_at 12.4859802104536
1415677_at 9.49213084865096
1415678_at 12.4549889420841
1415679_at 12.4170010549226
1415680_at 8.45127400600951
1415681_at 10.8189948499772
1415682_at 9.37736190004406
1415683_at 11.153647273978
1415684_at 9.00461842990584
1415685_at 10.6077671275736
1415686_at 10.6093351483837
1415687_a_at 13.1320085340139
1415688_at 12.8951524140805
1415689_s_at 8.95937399035526

Total number of rows: 45101

Table truncated, full table size 1246 Kbytes.




Supplementary file Size Download File type/resource
GSM1269620_BS2011051054_2.CEL.gz 4.0 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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