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Sample GSM1269621 Query DataSets for GSM1269621
Status Public on Dec 05, 2013
Title BS2011051055
Sample type RNA
 
Source name Gastrocnemius muscle mRNA from young (10 week old) wild-type mice
Organism Mus musculus
Characteristics tissue: Gastrocnemius muscle
genotype: WT
age: YOUNG
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol standard Affymetrix procedure.
Scan protocol standard Affymetrix procedure.
Description Gene expression data of gastrocnemius muscle mRNA from young (10 week old) wild-type mice
Data processing The data were analyzed with RMA (log2) normalized data using the just.rma function in the affy package in Biocinductor
 
Submission date Nov 20, 2013
Last update date Dec 05, 2013
Contact name Benjamin Haibe-Kains
E-mail(s) benjamin.haibe.kains@utoronto.ca
Phone +14165818626
Organization name Princess Margaret Cancer Centre
Department Princess Margaret Research
Lab Bioinformatics and Computational Genomics
Street address 610 University Avenue
City Toronto
State/province Ontario
ZIP/Postal code M5G 2M9
Country Canada
 
Platform ID GPL1261
Series (1)
GSE52550 Progressive loss of PGC-1alpha expression in aging muscle potentiates glucose intolerance and systemic inflammation

Data table header descriptions
ID_REF
VALUE RMA (log2) expression values

Data table
ID_REF VALUE
1415670_at 9.33261238608991
1415671_at 10.5351460907906
1415672_at 11.5275524719496
1415673_at 8.51839088513688
1415674_a_at 9.39576181054981
1415675_at 8.29894535227609
1415676_a_at 12.5529513645959
1415677_at 9.60701813281612
1415678_at 12.4903332111003
1415679_at 12.4125471868858
1415680_at 8.57216465809383
1415681_at 10.8277388821387
1415682_at 9.48751132095847
1415683_at 11.2014705035923
1415684_at 9.21661785065547
1415685_at 10.5966747440033
1415686_at 10.5915514996401
1415687_a_at 13.104196819374
1415688_at 13.0313823766924
1415689_s_at 9.16285992486782

Total number of rows: 45101

Table truncated, full table size 1246 Kbytes.




Supplementary file Size Download File type/resource
GSM1269621_BS2011051055.CEL.gz 4.0 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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