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Sample GSM1269622 Query DataSets for GSM1269622
Status Public on Dec 05, 2013
Title BS2011051056
Sample type RNA
 
Source name Gastrocnemius muscle mRNA from young (10 week old) knock-out mice
Organism Mus musculus
Characteristics tissue: Gastrocnemius muscle
genotype: KO
age: YOUNG
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol standard Affymetrix procedure.
Scan protocol standard Affymetrix procedure.
Description Gene expression data of gastrocnemius muscle mRNA from young (10 week old) knock-out mice
Data processing The data were analyzed with RMA (log2) normalized data using the just.rma function in the affy package in Biocinductor
 
Submission date Nov 20, 2013
Last update date Dec 05, 2013
Contact name Benjamin Haibe-Kains
E-mail(s) benjamin.haibe.kains@utoronto.ca
Phone +14165818626
Organization name Princess Margaret Cancer Centre
Department Princess Margaret Research
Lab Bioinformatics and Computational Genomics
Street address 610 University Avenue
City Toronto
State/province Ontario
ZIP/Postal code M5G 2M9
Country Canada
 
Platform ID GPL1261
Series (1)
GSE52550 Progressive loss of PGC-1alpha expression in aging muscle potentiates glucose intolerance and systemic inflammation

Data table header descriptions
ID_REF
VALUE RMA (log2) expression values

Data table
ID_REF VALUE
1415670_at 9.4698592280025
1415671_at 10.6276979503648
1415672_at 11.6102109657953
1415673_at 8.66879556095927
1415674_a_at 9.47947714596463
1415675_at 8.34175451102278
1415676_a_at 12.6027285638783
1415677_at 9.53700755453858
1415678_at 12.5772247042119
1415679_at 12.5676233999797
1415680_at 8.70150701522771
1415681_at 10.7285689195875
1415682_at 9.66928501292265
1415683_at 11.3658919091532
1415684_at 9.13919823899947
1415685_at 10.3465082835623
1415686_at 10.7663483425819
1415687_a_at 12.9590831844669
1415688_at 13.2253266744572
1415689_s_at 9.21256500351211

Total number of rows: 45101

Table truncated, full table size 1246 Kbytes.




Supplementary file Size Download File type/resource
GSM1269622_BS2011051056.CEL.gz 4.0 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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