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Sample GSM1269623 Query DataSets for GSM1269623
Status Public on Dec 05, 2013
Title BS2011051057
Sample type RNA
 
Source name Gastrocnemius muscle mRNA from young (10 week old) knock-out mice
Organism Mus musculus
Characteristics tissue: Gastrocnemius muscle
genotype: KO
age: YOUNG
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol standard Affymetrix procedure.
Scan protocol standard Affymetrix procedure.
Description Gene expression data of gastrocnemius muscle mRNA from young (10 week old) knock-out mice
Data processing The data were analyzed with RMA (log2) normalized data using the just.rma function in the affy package in Biocinductor
 
Submission date Nov 20, 2013
Last update date Dec 05, 2013
Contact name Benjamin Haibe-Kains
E-mail(s) benjamin.haibe.kains@utoronto.ca
Phone +14165818626
Organization name Princess Margaret Cancer Centre
Department Princess Margaret Research
Lab Bioinformatics and Computational Genomics
Street address 610 University Avenue
City Toronto
State/province Ontario
ZIP/Postal code M5G 2M9
Country Canada
 
Platform ID GPL1261
Series (1)
GSE52550 Progressive loss of PGC-1alpha expression in aging muscle potentiates glucose intolerance and systemic inflammation

Data table header descriptions
ID_REF
VALUE RMA (log2) expression values

Data table
ID_REF VALUE
1415670_at 9.58788001548215
1415671_at 10.6557585556046
1415672_at 11.6735829068739
1415673_at 8.83738579541113
1415674_a_at 9.54984164648337
1415675_at 8.37902396933955
1415676_a_at 12.5295896458543
1415677_at 9.55500380714693
1415678_at 12.5690204666202
1415679_at 12.473073325152
1415680_at 8.71024856672531
1415681_at 10.6494716307622
1415682_at 9.78319760649419
1415683_at 11.1542912514961
1415684_at 9.34345670915359
1415685_at 10.4239492718381
1415686_at 10.6419915045782
1415687_a_at 13.0346236821297
1415688_at 13.0902530425672
1415689_s_at 9.34824171235617

Total number of rows: 45101

Table truncated, full table size 1246 Kbytes.




Supplementary file Size Download File type/resource
GSM1269623_BS2011051057.CEL.gz 4.1 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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