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Sample GSM1269624 Query DataSets for GSM1269624
Status Public on Dec 05, 2013
Title BS2011051058
Sample type RNA
Source name Gastrocnemius muscle mRNA from young (10 week old) knock-out mice
Organism Mus musculus
Characteristics tissue: Gastrocnemius muscle
genotype: KO
age: YOUNG
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol standard Affymetrix procedure.
Scan protocol standard Affymetrix procedure.
Description Gene expression data of gastrocnemius muscle mRNA from young (10 week old) knock-out mice
Data processing The data were analyzed with RMA (log2) normalized data using the just.rma function in the affy package in Biocinductor
Submission date Nov 20, 2013
Last update date Dec 05, 2013
Contact name Benjamin Haibe-Kains
Phone +14165818626
Organization name Princess Margaret Cancer Centre
Department Princess Margaret Research
Lab Bioinformatics and Computational Genomics
Street address 610 University Avenue
City Toronto
State/province Ontario
ZIP/Postal code M5G 2M9
Country Canada
Platform ID GPL1261
Series (1)
GSE52550 Progressive loss of PGC-1alpha expression in aging muscle potentiates glucose intolerance and systemic inflammation

Data table header descriptions
VALUE RMA (log2) expression values

Data table
1415670_at 9.50764410143231
1415671_at 10.8120136015151
1415672_at 11.6404757677759
1415673_at 8.71664950749738
1415674_a_at 9.46926529803957
1415675_at 8.53530416684406
1415676_a_at 12.6382119699532
1415677_at 9.50257332736146
1415678_at 12.4646704159391
1415679_at 12.4611204968749
1415680_at 8.72236139760697
1415681_at 10.7300984233252
1415682_at 9.73886627763231
1415683_at 11.1457240870538
1415684_at 9.28341637751176
1415685_at 9.83660919398686
1415686_at 10.5955874576894
1415687_a_at 13.037526851882
1415688_at 13.056493670225
1415689_s_at 9.26918284621917

Total number of rows: 45101

Table truncated, full table size 1246 Kbytes.

Supplementary file Size Download File type/resource
GSM1269624_BS2011051058.CEL.gz 4.1 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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