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Sample GSM1269625 Query DataSets for GSM1269625
Status Public on Dec 05, 2013
Title BS2011051059
Sample type RNA
Source name Gastrocnemius muscle mRNA from old (24 month old) wild-type mice
Organism Mus musculus
Characteristics tissue: Gastrocnemius muscle
genotype: WT
age: OLD
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol standard Affymetrix procedure.
Scan protocol standard Affymetrix procedure.
Description Gene expression data of gastrocnemius muscle mRNA from old (24 month old) wild-type mice
Data processing The data were analyzed with RMA (log2) normalized data using the just.rma function in the affy package in Biocinductor
Submission date Nov 20, 2013
Last update date Dec 05, 2013
Contact name Benjamin Haibe-Kains
Phone +14165818626
Organization name Princess Margaret Cancer Centre
Department Princess Margaret Research
Lab Bioinformatics and Computational Genomics
Street address 610 University Avenue
City Toronto
State/province Ontario
ZIP/Postal code M5G 2M9
Country Canada
Platform ID GPL1261
Series (1)
GSE52550 Progressive loss of PGC-1alpha expression in aging muscle potentiates glucose intolerance and systemic inflammation

Data table header descriptions
VALUE RMA (log2) expression values

Data table
1415670_at 9.53564286576464
1415671_at 10.8772105186975
1415672_at 11.6275141278823
1415673_at 8.67078814224234
1415674_a_at 9.41646445611118
1415675_at 8.55219220330823
1415676_a_at 12.6350351933376
1415677_at 9.92298270591252
1415678_at 12.6109014947581
1415679_at 12.3592220252436
1415680_at 8.63578661553829
1415681_at 10.6887060756193
1415682_at 9.61718056563261
1415683_at 11.6347596232369
1415684_at 9.18551349652855
1415685_at 9.33115482777123
1415686_at 10.6089632110641
1415687_a_at 12.907105592497
1415688_at 12.8867743971416
1415689_s_at 9.32479251685778

Total number of rows: 45101

Table truncated, full table size 1246 Kbytes.

Supplementary file Size Download File type/resource
GSM1269625_BS2011051059.CEL.gz 4.1 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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