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Sample GSM1269626 Query DataSets for GSM1269626
Status Public on Dec 05, 2013
Title BS2011051060
Sample type RNA
 
Source name Gastrocnemius muscle mRNA from old (24 month old) wild-type mice
Organism Mus musculus
Characteristics tissue: Gastrocnemius muscle
genotype: WT
age: OLD
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol standard Affymetrix procedure.
Scan protocol standard Affymetrix procedure.
Description Gene expression data of gastrocnemius muscle mRNA from old (24 month old) wild-type mice
Data processing The data were analyzed with RMA (log2) normalized data using the just.rma function in the affy package in Biocinductor
 
Submission date Nov 20, 2013
Last update date Dec 05, 2013
Contact name Benjamin Haibe-Kains
E-mail(s) benjamin.haibe.kains@utoronto.ca
Phone +14165818626
Organization name Princess Margaret Cancer Centre
Department Princess Margaret Research
Lab Bioinformatics and Computational Genomics
Street address 610 University Avenue
City Toronto
State/province Ontario
ZIP/Postal code M5G 2M9
Country Canada
 
Platform ID GPL1261
Series (1)
GSE52550 Progressive loss of PGC-1alpha expression in aging muscle potentiates glucose intolerance and systemic inflammation

Data table header descriptions
ID_REF
VALUE RMA (log2) expression values

Data table
ID_REF VALUE
1415670_at 9.50236255088215
1415671_at 10.900627848476
1415672_at 11.5320208318731
1415673_at 8.42967151586839
1415674_a_at 9.36012950328428
1415675_at 8.71725075124693
1415676_a_at 12.6999547781576
1415677_at 9.96169462338229
1415678_at 12.5620360940277
1415679_at 12.2644582638421
1415680_at 8.56947445145805
1415681_at 10.6990329186609
1415682_at 9.67865353033519
1415683_at 11.5039622943268
1415684_at 8.95539213022528
1415685_at 9.02656955033528
1415686_at 10.5000552146641
1415687_a_at 13.1729298237617
1415688_at 12.8415512442682
1415689_s_at 9.22086745073008

Total number of rows: 45101

Table truncated, full table size 1246 Kbytes.




Supplementary file Size Download File type/resource
GSM1269626_BS2011051060.CEL.gz 3.9 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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