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Sample GSM1269627 Query DataSets for GSM1269627
Status Public on Dec 05, 2013
Title BS2011051061
Sample type RNA
 
Source name Gastrocnemius muscle mRNA from old (24 month old) wild-type mice
Organism Mus musculus
Characteristics tissue: Gastrocnemius muscle
genotype: WT
age: OLD
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol standard Affymetrix procedure.
Scan protocol standard Affymetrix procedure.
Description Gene expression data of gastrocnemius muscle mRNA from old (24 month old) wild-type mice
Data processing The data were analyzed with RMA (log2) normalized data using the just.rma function in the affy package in Biocinductor
 
Submission date Nov 20, 2013
Last update date Dec 05, 2013
Contact name Benjamin Haibe-Kains
E-mail(s) benjamin.haibe.kains@utoronto.ca
Phone +14165818626
Organization name Princess Margaret Cancer Centre
Department Princess Margaret Research
Lab Bioinformatics and Computational Genomics
Street address 610 University Avenue
City Toronto
State/province Ontario
ZIP/Postal code M5G 2M9
Country Canada
 
Platform ID GPL1261
Series (1)
GSE52550 Progressive loss of PGC-1alpha expression in aging muscle potentiates glucose intolerance and systemic inflammation

Data table header descriptions
ID_REF
VALUE RMA (log2) expression values

Data table
ID_REF VALUE
1415670_at 9.55112691202425
1415671_at 10.7152341531
1415672_at 11.5113719935489
1415673_at 8.39792822370362
1415674_a_at 9.31641037864402
1415675_at 8.62598761203041
1415676_a_at 12.6566836899631
1415677_at 9.96489445642019
1415678_at 12.6131697951219
1415679_at 12.3812093671342
1415680_at 8.71923037790127
1415681_at 10.6388946967562
1415682_at 9.45306020190293
1415683_at 11.6081195901681
1415684_at 8.96381789741381
1415685_at 10.0462355847961
1415686_at 10.509704672315
1415687_a_at 13.017966809369
1415688_at 12.9223646977447
1415689_s_at 9.2781361833123

Total number of rows: 45101

Table truncated, full table size 1246 Kbytes.




Supplementary file Size Download File type/resource
GSM1269627_BS2011051061.CEL.gz 4.0 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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