NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1269628 Query DataSets for GSM1269628
Status Public on Dec 05, 2013
Title BS2011051062
Sample type RNA
 
Source name Gastrocnemius muscle mRNA from old (24 month old) knock-out mice
Organism Mus musculus
Characteristics tissue: Gastrocnemius muscle
genotype: KO
age: OLD
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol standard Affymetrix procedure.
Scan protocol standard Affymetrix procedure.
Description Gene expression data of gastrocnemius muscle mRNA from old (24 month old) knock-out mice
Data processing The data were analyzed with RMA (log2) normalized data using the just.rma function in the affy package in Biocinductor
 
Submission date Nov 20, 2013
Last update date Dec 05, 2013
Contact name Benjamin Haibe-Kains
E-mail(s) benjamin.haibe.kains@utoronto.ca
Phone +14165818626
Organization name Princess Margaret Cancer Centre
Department Princess Margaret Research
Lab Bioinformatics and Computational Genomics
Street address 610 University Avenue
City Toronto
State/province Ontario
ZIP/Postal code M5G 2M9
Country Canada
 
Platform ID GPL1261
Series (1)
GSE52550 Progressive loss of PGC-1alpha expression in aging muscle potentiates glucose intolerance and systemic inflammation

Data table header descriptions
ID_REF
VALUE RMA (log2) expression values

Data table
ID_REF VALUE
1415670_at 9.74641658749653
1415671_at 11.2316360018077
1415672_at 11.4591565977919
1415673_at 7.80769631736411
1415674_a_at 9.63364637272232
1415675_at 8.87795732629396
1415676_a_at 13.1148217670753
1415677_at 9.27840103830284
1415678_at 12.5418701121944
1415679_at 12.4124665663942
1415680_at 9.03768607231329
1415681_at 10.6486112324502
1415682_at 9.77581843871359
1415683_at 12.3843067606611
1415684_at 8.74745203932829
1415685_at 9.85823418002931
1415686_at 10.9263089308692
1415687_a_at 12.8887967618099
1415688_at 12.9441688518363
1415689_s_at 9.55326826114822

Total number of rows: 45101

Table truncated, full table size 1246 Kbytes.




Supplementary file Size Download File type/resource
GSM1269628_BS2011051062.CEL.gz 4.1 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap