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Sample GSM1269629 Query DataSets for GSM1269629
Status Public on Dec 05, 2013
Title BS2011051063
Sample type RNA
 
Source name Gastrocnemius muscle mRNA from old (24 month old) knock-out mice
Organism Mus musculus
Characteristics tissue: Gastrocnemius muscle
genotype: KO
age: OLD
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol standard Affymetrix procedure.
Scan protocol standard Affymetrix procedure.
Description Gene expression data of gastrocnemius muscle mRNA from old (24 month old) knock-out mice
Data processing The data were analyzed with RMA (log2) normalized data using the just.rma function in the affy package in Biocinductor
 
Submission date Nov 20, 2013
Last update date Dec 05, 2013
Contact name Benjamin Haibe-Kains
E-mail(s) benjamin.haibe.kains@utoronto.ca
Phone +14165818626
Organization name Princess Margaret Cancer Centre
Department Princess Margaret Research
Lab Bioinformatics and Computational Genomics
Street address 610 University Avenue
City Toronto
State/province Ontario
ZIP/Postal code M5G 2M9
Country Canada
 
Platform ID GPL1261
Series (1)
GSE52550 Progressive loss of PGC-1alpha expression in aging muscle potentiates glucose intolerance and systemic inflammation

Data table header descriptions
ID_REF
VALUE RMA (log2) expression values

Data table
ID_REF VALUE
1415670_at 9.64387220291882
1415671_at 10.9047721204559
1415672_at 11.6559410307809
1415673_at 8.84240272941265
1415674_a_at 9.66236733621027
1415675_at 8.85000754376761
1415676_a_at 12.7751764332521
1415677_at 9.83828194592234
1415678_at 12.6780470111208
1415679_at 12.4625921766466
1415680_at 8.68497870759857
1415681_at 10.6475241870306
1415682_at 9.74537937455207
1415683_at 11.6608585061569
1415684_at 9.29717270246587
1415685_at 9.89314241793587
1415686_at 10.6000421407924
1415687_a_at 12.8508019499689
1415688_at 12.861149410168
1415689_s_at 9.2220243151454

Total number of rows: 45101

Table truncated, full table size 1246 Kbytes.




Supplementary file Size Download File type/resource
GSM1269629_BS2011051063.CEL.gz 4.1 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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