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Sample GSM1269630 Query DataSets for GSM1269630
Status Public on Dec 05, 2013
Title BS2011051064
Sample type RNA
 
Source name Gastrocnemius muscle mRNA from old (24 month old) knock-out mice
Organism Mus musculus
Characteristics tissue: Gastrocnemius muscle
genotype: KO
age: OLD
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol standard Affymetrix procedure.
Scan protocol standard Affymetrix procedure.
Description Gene expression data of gastrocnemius muscle mRNA from old (24 month old) knock-out mice
Data processing The data were analyzed with RMA (log2) normalized data using the just.rma function in the affy package in Biocinductor
 
Submission date Nov 20, 2013
Last update date Dec 05, 2013
Contact name Benjamin Haibe-Kains
E-mail(s) benjamin.haibe.kains@utoronto.ca
Phone +14165818626
Organization name Princess Margaret Cancer Centre
Department Princess Margaret Research
Lab Bioinformatics and Computational Genomics
Street address 610 University Avenue
City Toronto
State/province Ontario
ZIP/Postal code M5G 2M9
Country Canada
 
Platform ID GPL1261
Series (1)
GSE52550 Progressive loss of PGC-1alpha expression in aging muscle potentiates glucose intolerance and systemic inflammation

Data table header descriptions
ID_REF
VALUE RMA (log2) expression values

Data table
ID_REF VALUE
1415670_at 9.7862968591129
1415671_at 10.8992142811124
1415672_at 11.538038731418
1415673_at 8.66216439143206
1415674_a_at 9.49550947632506
1415675_at 8.69917457359264
1415676_a_at 12.7994682612257
1415677_at 9.92671314217284
1415678_at 12.5996526840422
1415679_at 12.607272797264
1415680_at 8.67040791436131
1415681_at 10.8107273637814
1415682_at 9.64146389004091
1415683_at 11.7413848869747
1415684_at 8.99816875204838
1415685_at 10.1047202272061
1415686_at 10.6738925835304
1415687_a_at 13.0633873780137
1415688_at 12.9172733857445
1415689_s_at 9.27857041560671

Total number of rows: 45101

Table truncated, full table size 1246 Kbytes.




Supplementary file Size Download File type/resource
GSM1269630_BS2011051064.CEL.gz 4.0 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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