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Status
Public on Mar 16, 2004
Title
germ cells on MSC1 day 20 GPL342
Sample type
RNA
Source name
germ cells from 22 day old rat testis, cultured for 20 days
Organism
Rattus norvegicus Extracted molecule
total RNA
Description
50 ng total RNA were amplified using two rounds of amplification. Detection calls were calculated using a Tau value of 0.015. Signal intensities were scaled to an average of 250 (scale factor 3.100).
Submission date
Nov 10, 2003
Last update date
May 28, 2005
Contact name
Nikolaus Schultz
E-mail(s)
schultz@cbio.mskcc.org Phone
646-888-2604
Organization name
Memorial Sloan-Kettering Cancer Center
Department
Computational Biology Center
Street address
1275 York Ave, Box 460
City
New York
State/province
NY
ZIP/Postal code
10065
Country
USA
Platform ID
GPL342 Series (1)
Data table header descriptions ID_REF Affymetrix probe id
VALUE signal intensity
ABS_CALL present (P), absent (A), marginal (M) call
DETECTION P-VALUE p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
1303.7
P
0.002556
AFFX-BioB-M_at
2324
P
0.000044
AFFX-BioB-3_at
1454.3
P
0.000044
AFFX-BioC-5_at
3212.5
P
0.000052
AFFX-BioC-3_at
2094.1
P
0.000044
AFFX-BioDn-5_at
2723.5
P
0.00007
AFFX-BioDn-3_at
9762.8
P
0.000052
AFFX-CreX-5_at
28831.7
P
0.000044
AFFX-CreX-3_at
25997.6
P
0.000044
AFFX-DapX-5_at
65.1
P
0.042962
AFFX-DapX-M_at
61
A
0.165861
AFFX-DapX-3_at
4.7
A
0.979978
AFFX-LysX-5_at
5.5
A
0.783476
AFFX-LysX-M_at
8.2
A
0.897835
AFFX-LysX-3_at
14.2
A
0.749204
AFFX-PheX-5_at
7.6
A
0.852061
AFFX-PheX-M_at
6.9
A
0.783476
AFFX-PheX-3_at
40.5
A
0.699394
AFFX-ThrX-5_at
10.5
A
0.760937
AFFX-ThrX-M_at
33.7
A
0.5
15333 408 Kbytes .Supplementary file Size Download File type/resource GSM12794.CEL.gz
2.4 Mb
(ftp) (http) CEL
