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Status
Public on Mar 16, 2004
Title
germ cells on STO day 1 GPL342
Sample type
RNA
Source name
germ cells from 22 day old rat testis, cultured for 1 day
Organism
Rattus norvegicus Extracted molecule
total RNA
Description
50 ng total RNA were amplified using two rounds of amplification. Detection calls were calculated using a Tau value of 0.015. Signal intensities were scaled to an average of 250 (scale factor 1.546).
Submission date
Nov 10, 2003
Last update date
May 28, 2005
Contact name
Nikolaus Schultz
E-mail(s)
schultz@cbio.mskcc.org Phone
646-888-2604
Organization name
Memorial Sloan-Kettering Cancer Center
Department
Computational Biology Center
Street address
1275 York Ave, Box 460
City
New York
State/province
NY
ZIP/Postal code
10065
Country
USA
Platform ID
GPL342 Series (1)
Data table header descriptions ID_REF Affymetrix probe id
VALUE signal intensity
ABS_CALL present (P), absent (A), marginal (M) call
DETECTION P-VALUE p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
412.2
P
0.001796
AFFX-BioB-M_at
590.3
P
0.000044
AFFX-BioB-3_at
293.9
P
0.000147
AFFX-BioC-5_at
1038.9
P
0.00007
AFFX-BioC-3_at
564
P
0.000052
AFFX-BioDn-5_at
710.8
P
0.000169
AFFX-BioDn-3_at
2944
P
0.000095
AFFX-CreX-5_at
7536.4
P
0.000044
AFFX-CreX-3_at
8305.8
P
0.000044
AFFX-DapX-5_at
35.6
A
0.0727
AFFX-DapX-M_at
46.4
P
0.023929
AFFX-DapX-3_at
10.9
A
0.772364
AFFX-LysX-5_at
1.8
A
0.969024
AFFX-LysX-M_at
5.4
A
0.852061
AFFX-LysX-3_at
37.1
A
0.123572
AFFX-PheX-5_at
4.6
A
0.978098
AFFX-PheX-M_at
2.5
A
0.969024
AFFX-PheX-3_at
66.5
A
0.41138
AFFX-ThrX-5_at
10.1
A
0.876428
AFFX-ThrX-M_at
24
A
0.368438
15333 407 Kbytes .Supplementary file Size Download File type/resource GSM12796.CEL.gz
2.5 Mb
(ftp) (http) CEL
