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Sample GSM128493 Query DataSets for GSM128493
Status Public on Apr 30, 2007
Title 1353_p_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (2)
GSE3578 Activated Cell Death Pathway
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 12916.9063 118.8480 G 131.2562 13000.9063 8554.0000 12478.7568 183 15.2644300460815 99.0498255756098 83.5221 84.0000 10.0332 234 118.8480
1002 1 1058.5812 9.7400 G 11.5106 1143.5812 1305.0000 567.1877 119 12.3091630935669 99.3506113699457 84.7333 85.0000 9.5671 124 9.7400
1003 1 14.9487 0.1375 G 1.0151 97.9487 97.0000 13.5039 39 7.04672574996948 96.4946027718787 83.6703 83.0000 8.9964 188 0.1375
1004 1 17.8913 0.1646 G 1.0354 99.8913 101.0000 13.3012 46 7.65303993225098 96.4791700536217 82.7912 82.0000 9.6528 188 0.1646
1005 1 18.6444 0.1715 G 1.0442 101.6444 99.0000 12.4725 45 7.56939744949341 97.3459843681142 84.1257 83.0000 9.5640 181 0.1715
1006 1 21.8400 0.2009 G 1.0649 105.8400 105.0000 10.3757 50 7.97884559631348 99.3901853771705 84.5444 84.0000 10.2601 186 0.2009
1007 1 20.8333 0.1917 G 1.0774 103.8333 103.0000 14.2351 60 8.74038791656494 96.3723177683488 82.9101 83.0000 8.9149 184 0.1917
1008 1 12326.5127 113.4158 G 129.8504 12408.5127 8073.0000 12067.7891 199 15.9177465438843 95.560029466929 81.3548 82.0000 9.0400 225 113.4158
1009 1 411.3518 3.7848 G 5.1522 492.3518 508.0000 192.1712 110 11.8345403671265 95.5606229424538 82.8500 81.0000 9.7071 124 3.7848
1010 1 587.5743 5.4062 G 7.0032 667.5743 705.0000 296.2541 103 11.4517974853516 95.3244168991099 80.8371 80.0000 10.2163 184 5.4062
1011 1 72.9294 0.6710 G 1.5923 155.9294 159.0000 26.6152 85 10.4031419754028 97.9290674796285 82.8077 83.0000 9.9527 188 0.6710
1012 1 24.3710 0.2242 G 1.1110 106.3710 106.0000 16.0043 62 8.88486671447754 95.7462722121048 81.6923 82.0000 9.1642 188 0.2242
1013 1 35.4103 0.3258 G 1.2375 116.4103 114.0000 17.4315 78 9.96557521820068 94.0719598665352 81.1955 81.0000 8.7146 185 0.3258
1014 1 13.6250 0.1254 G 1.0062 96.6250 97.0000 13.0090 48 7.81764030456543 96.0266626323307 82.5414 83.0000 8.6844 187 0.1254
1015 1 12115.6631 111.4758 G 128.0505 12196.6631 6474.0000 11747.3076 198 15.8777027130127 95.2488241069982 81.2237 81.0000 9.4992 236 111.4758
1016 1 62.8235 0.5780 G 1.5421 142.8235 140.0000 19.8839 85 10.4031419754028 92.6178435419517 80.5967 80.0000 8.4119 187 0.5780
1017 1 37.4271 0.3444 G 1.2477 118.4271 118.0000 15.3180 96 11.0558128356934 94.9163528229501 81.7083 81.0000 9.2776 124 0.3444
1018 1 13.4255 0.1235 G 1.0026 95.4255 96.0000 14.7009 47 7.73577785491943 95.1806737257241 80.8681 82.0000 8.7871 188 0.1235
1019 1 7.6964 0.0708 L 0.9362 90.6964 89.0000 13.3308 56 8.444016456604 96.8804640736815 82.3583 83.0000 9.2536 124 0.0708
1020 1 42.8800 0.3945 G 1.2622 125.8800 123.0000 20.7152 75 9.77204990386963 99.7275282548971 83.4463 83.0000 11.1517 183 0.3945

Total number of rows: 54359

Table truncated, full table size 6969 Kbytes.




Supplementary file Size Download File type/resource
GSM128493.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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