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Sample GSM128495 Query DataSets for GSM128495
Status Public on Apr 30, 2007
Title 1353_d_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 14287.9199 207.9600 G 135.9689 14372.9199 9565.0000 13767.4375 177 15.0121088027954 105.70740550461 87.0833 85.0000 13.8049 124 207.9600
1002 1 914.9720 13.3174 G 10.2993 994.9720 1098.0000 507.0748 109 11.7806243896484 96.6055439327251 81.4043 80.0000 11.0704 145 13.3174
1003 1 -8.1379 -0.1184 L 0.7049 75.8621 77.0000 9.9610 29 6.07650756835938 107.614088853974 85.1103 84.0000 15.7427 140 -0.1184
1004 1 12.2500 0.1783 L 0.9572 98.2500 100.0000 11.5016 40 7.13649654388428 102.647473224568 87.2022 86.0000 11.0983 184 0.1783
1005 1 122.9508 1.7895 G 1.6722 208.9508 176.0000 89.8072 61 8.81292343139648 124.958920692017 91.3667 86.0000 25.9726 186 1.7895
1006 1 15.7632 0.2294 L 0.9966 92.7632 95.0000 15.3784 38 6.95579624176025 93.0769174735377 77.7472 77.0000 10.7179 184 0.2294
1007 1 8.9674 0.1305 L 0.9325 84.9674 83.0000 13.6018 92 10.8230323791504 91.1169434095142 77.5219 76.0000 10.0780 236 0.1305
1008 1 12757.1611 185.6799 G 127.5321 12839.1611 3920.0000 13934.7979 203 16.0769290924072 100.673959329828 82.1674 82.0000 12.4493 235 185.6799
1009 1 347.3579 5.0558 G 4.4358 427.3579 473.0000 154.3395 95 10.9980792999268 96.3423696968987 80.1160 80.0000 10.8949 187 5.0558
1010 1 627.0714 9.1270 G 7.4396 706.0714 785.0000 339.4989 100 11.2837915420532 94.9075511908478 79.5200 79.0000 10.6050 181 9.1270
1011 1 66.2949 0.9649 G 1.5439 144.2949 146.0000 23.4926 78 9.96557521820068 93.4609077875574 77.9560 78.0000 10.3073 188 0.9649
1012 1 51.8676 0.7549 G 1.3946 127.8676 127.0000 24.3829 68 9.30485343933105 91.6852609209183 76.3407 76.0000 10.4568 188 0.7549
1013 1 38.7143 0.5635 G 1.2435 115.7143 116.0000 16.7478 70 9.44069766998291 93.0565932173346 77.1589 77.0000 10.7044 157 0.5635
1014 1 2.6923 0.0392 L 0.8449 83.6923 82.0000 18.0315 52 8.1368579864502 99.0544593430024 79.5686 81.0000 12.0363 106 0.0392
1015 1 14956.1104 217.6855 G 151.8316 15036.1104 8785.0000 15302.1963 231 17.1498794555664 99.0315223468165 81.0179 80.0000 12.6877 231 217.6855
1016 1 19.9231 0.2900 G 1.0474 98.9231 99.0000 14.8545 65 9.09728336334229 94.4451961927689 80.0735 79.0000 10.2968 140 0.2900
1017 1 10.8333 0.1577 L 0.9542 89.8333 90.0000 13.0971 66 9.16699600219727 94.1439886743869 78.3846 79.0000 10.0960 108 0.1577
1018 1 13.9524 0.2031 L 0.9779 91.9524 93.0000 17.1658 42 7.3127326965332 94.028183741715 79.1285 78.0000 10.6855 185 0.2031
1019 1 7.9000 0.1150 L 0.9072 84.9000 82.0000 10.9677 30 6.18038702011108 93.5871809764597 77.2439 77.0000 11.0581 170 0.1150
1020 1 23.5500 0.3428 G 1.0761 102.5500 104.0000 12.3483 60 8.74038791656494 95.2988729332152 78.4483 79.0000 10.8659 151 0.3428

Total number of rows: 54359

Table truncated, full table size 6975 Kbytes.




Supplementary file Size Download File type/resource
GSM128495.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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