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Sample GSM128498 Query DataSets for GSM128498
Status Public on Apr 30, 2007
Title 1583_d_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 14878.1895 172.2247 G 157.6725 14954.1895 7980.0000 15414.4248 166 14.5381488800049 94.8433581964972 77.9167 76.0000 12.5622 124 172.2247
1002 1 1017.7129 11.7807 G 12.0276 1093.7129 1266.0000 587.8133 103 11.4517974853516 90.93353375842 76.4505 76.0000 9.9557 188 11.7807
1003 1 4.3269 0.0501 L 0.8824 81.3269 82.0000 10.9012 52 8.1368579864502 92.1643258002898 76.7167 77.0000 10.1096 124 0.0501
1004 1 17.7179 0.2051 G 1.0150 94.7179 95.0000 12.8361 39 7.04672574996948 93.3175090298923 77.4615 77.0000 10.8783 162 0.2051
1005 1 4.2614 0.0493 L 0.8864 78.2614 79.0000 13.6536 88 10.5851345062256 88.287115267462 74.9581 74.0000 9.5247 197 0.0493
1006 1 18.2326 0.2111 G 1.0313 93.2326 95.0000 11.6436 43 7.3992772102356 90.4006107685524 75.1404 75.0000 10.2671 184 0.2111
1007 1 18.0000 0.2084 G 1.0352 93.0000 93.0000 11.2940 45 7.56939744949341 89.8373711411436 76.3516 75.0000 9.8916 188 0.2084
1008 1 15652.2793 181.1853 G 158.5046 15731.2793 8132.0000 16134.5586 163 14.4061803817749 99.2480879897279 79.9667 79.0000 13.4987 124 181.1853
1009 1 687.7041 7.9606 G 8.3584 764.7041 879.0000 376.7675 100 11.2837915420532 91.4889128290251 77.3407 77.0000 9.6593 188 7.9606
1010 1 737.9667 8.5424 G 9.2008 811.9667 943.0000 384.9956 90 10.7047443389893 88.249262938635 73.9670 74.0000 9.4995 188 8.5424
1011 1 88.3086 1.0222 G 1.8204 165.3086 165.0000 35.0011 81 10.1554126739502 90.8091253811656 76.2582 77.0000 9.2061 188 1.0222
1012 1 70.5890 0.8171 G 1.6219 145.5890 147.0000 25.7058 73 9.64087581634521 89.7628282659608 76.1044 75.0000 9.8419 188 0.8171
1013 1 46.7429 0.5411 G 1.3663 120.7429 120.0000 15.9693 70 9.44069766998291 88.3743181812034 74.8791 74.0000 9.5829 188 0.5411
1014 1 58.1806 0.6735 G 1.4614 131.1806 135.0000 19.1096 72 9.57461452484131 89.7658460757359 73.7756 73.0000 11.1772 162 0.6735
1015 1 15274.9238 176.8172 G 168.5314 15350.9238 6090.0000 16773.7520 213 16.4681510925293 91.0864383863898 76.9213 76.0000 10.0576 224 176.8172
1016 1 29.7273 0.3441 G 1.1396 106.7273 108.0000 15.9740 66 9.16699600219727 93.6516552660023 78.2044 77.0000 11.1011 187 0.3441
1017 1 13.3088 0.1541 L 0.9941 90.3088 91.0000 11.9512 68 9.30485343933105 90.8421404040598 76.0250 77.0000 9.2281 124 0.1541
1018 1 9.1053 0.1054 L 0.9431 84.1053 87.0000 11.2689 38 6.95579624176025 89.1819166741772 75.0769 75.0000 9.4546 188 0.1054
1019 1 9.6585 0.1118 L 0.9456 84.6585 84.0000 11.7652 41 7.22515201568604 89.5263634316246 75.3926 75.0000 9.6842 169 0.1118
1020 1 19.1875 0.2221 G 1.0421 97.1875 97.0000 12.9029 48 7.81764030456543 93.2631279351074 78.3571 78.0000 10.1754 174 0.2221

Total number of rows: 54359

Table truncated, full table size 6980 Kbytes.




Supplementary file Size Download File type/resource
GSM128498.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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