NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM128499 Query DataSets for GSM128499
Status Public on Apr 30, 2007
Title 1583_d_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 12755.8467 163.7090 G 142.2885 12830.8467 2930.0000 15231.6172 172 14.7985544204712 90.1748981449469 75.4333 75.0000 10.1166 124 163.7090
1002 1 995.9011 12.7814 G 11.9374 1071.9011 1186.0000 641.5397 91 10.7640514373779 89.7932663785642 75.9451 76.0000 9.1955 188 12.7814
1003 1 2.9310 0.0376 L 0.8625 77.9310 75.0000 14.2101 87 10.5248203277588 90.3501861504301 75.2093 75.0000 10.2335 223 0.0376
1004 1 21.8810 0.2808 G 1.0815 96.8810 97.0000 12.2420 42 7.3127326965332 89.5766774650755 74.2765 75.0000 9.7178 176 0.2808
1005 1 10.4390 0.1340 L 0.9593 85.4390 88.0000 14.1921 41 7.22515201568604 89.0639294466896 74.8686 75.0000 9.3759 181 0.1340
1006 1 19.6750 0.2525 G 1.0408 93.6750 93.0000 12.5666 40 7.13649654388428 90.0013927372418 74.4560 74.0000 10.6676 188 0.2525
1007 1 19.2917 0.2476 G 1.0565 93.2917 92.0000 13.7598 48 7.81764030456543 88.2992945982762 74.1209 74.0000 9.5329 188 0.2476
1008 1 14134.7510 181.4059 G 153.9518 14211.7510 4677.0000 15871.6709 179 15.0966844558716 92.3129732262228 77.7583 77.0000 10.2087 124 181.4059
1009 1 614.6594 7.8886 G 7.6735 689.6594 806.0000 316.2476 91 10.7640514373779 89.875517803775 73.9435 75.0000 9.9170 183 7.8886
1010 1 810.6630 10.4041 G 9.5818 885.6630 1030.0000 432.8341 92 10.8230323791504 92.4315291459625 75.3051 75.0000 11.6210 183 10.4041
1011 1 103.6329 1.3300 G 2.0266 176.6329 178.0000 35.0010 79 10.0292530059814 87.1557069327207 73.7500 73.0000 9.4371 178 1.3300
1012 1 80.8904 1.0382 G 1.7343 156.8904 162.0000 31.7631 73 9.64087581634521 90.4648764811297 74.8081 76.0000 9.6432 178 1.0382
1013 1 41.2877 0.5299 G 1.2959 115.2877 114.0000 16.3468 73 9.64087581634521 88.9658426903862 75.2198 74.0000 9.9772 188 0.5299
1014 1 54.5797 0.7005 G 1.4444 128.5797 129.0000 17.5098 69 9.37302112579346 89.0174525754741 74.3022 74.0000 10.0116 188 0.7005
1015 1 12869.0645 165.1620 G 140.4231 12946.0645 3573.0000 15384.6768 158 14.1835060119629 92.193240492456 79.0833 77.0000 10.1288 124 165.1620
1016 1 21.5745 0.2769 G 1.1100 96.5745 96.0000 12.5863 47 7.73577785491943 87.0018025916726 74.5000 75.0000 8.0012 162 0.2769
1017 1 18.5263 0.2378 G 1.0517 93.5263 94.0000 14.0520 38 6.95579624176025 88.9323191950977 75.3901 75.0000 9.2882 188 0.2378
1018 1 28.3939 0.3644 G 1.1520 101.3939 94.0000 27.2874 33 6.48204469680786 88.013688079626 73.5385 73.0000 10.0091 188 0.3644
1019 1 18.6154 0.2389 G 1.0432 93.6154 95.0000 14.7746 39 7.04672574996948 89.7426537676011 74.2582 75.0000 9.8284 188 0.2389
1020 1 19.5111 0.2504 G 1.0394 96.5111 96.0000 12.8004 45 7.56939744949341 92.8507963770941 75.5440 77.0000 10.5672 188 0.2504

Total number of rows: 54359

Table truncated, full table size 6950 Kbytes.




Supplementary file Size Download File type/resource
GSM128499.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap