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Sample GSM128500 Query DataSets for GSM128500
Status Public on Sep 28, 2010
Title 1591_p_1
Sample type RNA
 
Source name biopsy, prior to treatment, chemoradiotherapy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Sep 28, 2010
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 17016.5000 213.4431 G 165.8094 17099.5000 5237.0000 18800.4180 164 14.4503040313721 103.127463780139 84.6250 83.0000 13.4183 124
1002 1 789.0707 9.8975 G 9.2956 867.0707 895.0000 437.1951 101 11.3400707244873 93.2773085759175 78.7956 78.0000 10.1849 187
1003 1 -1.2000 -0.0151 L 0.8090 81.8000 80.0000 14.1252 50 7.97884559631348 101.109789709522 82.7273 83.0000 12.0732 114
1004 1 12.1250 0.1521 L 0.9877 90.1250 91.0000 12.6633 40 7.13649654388428 91.2498381602427 77.7198 78.0000 8.8332 188
1005 1 9.1047 0.1142 L 0.9244 85.1047 85.0000 10.6945 86 10.4641580581665 92.0660145357638 77.6552 76.0000 10.7107 211
1006 1 20.3958 0.2558 G 1.0289 99.3958 99.0000 13.3506 48 7.81764030456543 96.6021650984608 79.0488 79.0000 11.7348 170
1007 1 7.1477 0.0897 L 0.9006 85.1477 85.0000 14.5926 88 10.5851345062256 94.5430579564737 79.0636 78.0000 11.0287 228
1008 1 19421.8750 243.6144 G 181.3512 19506.8750 10952.0000 20133.1602 161 14.3175268173218 107.564064183577 87.9279 85.0000 15.0427 115
1009 1 256.0330 3.2115 G 3.4793 337.0330 350.0000 106.1613 91 10.7640514373779 96.867478188317 80.4025 81.0000 10.5783 165
1010 1 649.4468 8.1462 G 7.7350 726.4468 834.0000 347.8940 94 10.9400415420532 93.9168835860386 79.2360 77.0000 11.2779 184
1011 1 62.8026 0.7878 G 1.5099 137.8026 138.0000 23.3469 76 9.83698177337646 91.2646516642185 77.2747 75.0000 10.8431 188
1012 1 48.5077 0.6084 G 1.3530 127.5077 127.0000 20.6927 65 9.09728336334229 94.2431553550454 79.1319 79.0000 10.1621 188
1013 1 34.0946 0.4277 G 1.2038 113.0946 111.0000 18.6838 74 9.70668506622314 93.9470493472768 78.8297 79.0000 9.9647 188
1014 1 41.0132 0.5144 G 1.2700 118.0132 117.0000 16.1249 76 9.83698177337646 92.9264888787595 77.1348 77.0000 10.6177 184
1015 1 21561.0117 270.4462 G 201.0784 21645.0117 15735.0000 20710.2891 168 14.6254653930664 107.644630716257 86.6583 84.0000 15.7631 124
1016 1 138.4659 1.7368 G 2.2512 218.4659 221.0000 46.2928 88 10.5851345062256 97.0428489775161 80.8743 80.0000 11.3619 181
1017 1 13.3922 0.1680 L 0.9733 94.3922 97.0000 14.1131 51 8.0582389831543 96.9809506405882 80.8077 81.0000 10.6540 188
1018 1 12.3750 0.1552 L 0.9572 89.3750 90.0000 14.0084 40 7.13649654388428 93.3698211963532 77.7527 77.0000 10.9132 188
1019 1 1.8452 0.0231 L 0.8601 82.8452 82.0000 11.8115 84 10.3417663574219 96.3149083318822 79.9474 81.0000 10.2099 236
1020 1 18.2340 0.2287 G 1.0164 98.2340 99.0000 13.0485 47 7.73577785491943 96.6485896382886 80.5769 80.0000 11.0991 188

Total number of rows: 54359

Table truncated, full table size 6578 Kbytes.




Supplementary file Size Download File type/resource
GSM128500.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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