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Sample GSM128504 Query DataSets for GSM128504
Status Public on Apr 30, 2007
Title 1676_p_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (2)
GSE3578 Activated Cell Death Pathway
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 10803.8682 110.6567 G 119.5036 10881.8682 4704.0000 11131.4131 191 15.5945100784302 91.0589258875401 77.8744 78.0000 8.7059 223 110.6567
1002 1 832.4495 8.5262 G 9.9266 910.4495 1006.0000 492.0750 111 11.8882122039795 91.7181330639715 78.9182 78.0000 9.1454 114 8.5262
1003 1 4.7614 0.0488 L 0.8886 85.7614 84.0000 12.5436 88 10.5851345062256 96.5179864454332 81.2280 81.0000 10.3453 201 0.0488
1004 1 13.5909 0.1392 L 0.9987 93.5909 94.0000 15.0519 44 7.48482084274292 93.7128649342125 80.0495 80.0000 9.1419 188 0.1392
1005 1 13.4054 0.1373 L 0.9780 93.4054 95.0000 12.5320 37 6.86366271972656 95.5055009060355 79.7582 80.0000 10.3370 188 0.1373
1006 1 19.4286 0.1990 G 1.0621 98.4286 98.0000 14.0469 56 8.444016456604 92.6776713902031 78.8846 79.0000 9.1184 188 0.1990
1007 1 40.3077 0.4128 G 1.2938 119.3077 120.0000 15.0549 78 9.96557521820068 92.2167702358968 78.5934 79.0000 8.8112 188 0.4128
1008 1 11028.6436 112.9589 G 120.2446 11107.6436 5965.0000 11129.8428 193 15.6759443283081 92.3754173831641 79.4649 79.0000 8.9169 236 112.9589
1009 1 547.3398 5.6060 G 7.0155 624.3398 701.0000 270.8276 105 11.562445640564 88.9942591317921 77.9725 77.0000 7.9962 188 5.6060
1010 1 508.6111 5.2094 G 6.5161 585.6111 641.0000 242.3990 90 10.7047443389893 89.8717644632738 78.2473 77.0000 8.5812 188 5.2094
1011 1 289.5104 2.9653 G 3.9794 368.5104 373.0000 144.2135 96 11.0558128356934 92.6050715748333 78.6978 79.0000 9.0701 188 2.9653
1012 1 21.9231 0.2245 G 1.0849 99.9231 100.0000 12.3411 52 8.1368579864502 92.101204842047 77.5824 78.0000 9.4008 188 0.2245
1013 1 18.8154 0.1927 G 1.0455 98.8154 99.0000 12.2912 65 9.09728336334229 94.5124389959413 79.9286 80.0000 9.6750 188 0.1927
1014 1 14.8000 0.1516 G 1.0235 93.8000 94.0000 9.6623 60 8.74038791656494 91.6444070809426 78.9121 79.0000 8.4296 188 0.1516
1015 1 11122.4307 113.9195 G 121.0126 11201.4307 5308.0000 11310.0996 190 15.5536336898804 92.5641711875581 79.1850 79.0000 9.0428 235 113.9195
1016 1 86.2262 0.8832 G 1.8016 165.2262 166.0000 30.8917 84 10.3417663574219 91.7099134894155 79.5249 79.0000 8.4733 187 0.8832
1017 1 48.1266 0.4929 G 1.3698 128.1266 129.0000 17.8966 79 10.0292530059814 93.5350118058391 79.6648 80.0000 9.0233 188 0.4929
1018 1 5.7000 0.0584 L 0.9415 84.7000 84.0000 11.3112 30 6.18038702011108 89.9662329259298 78.7088 79.0000 7.3108 188 0.0584
1019 1 7.6286 0.0781 L 0.9260 85.6286 87.0000 12.1021 35 6.67558097839355 92.4708574123912 78.9121 78.0000 9.6472 188 0.0781
1020 1 26.7188 0.2737 G 1.1054 110.7188 110.0000 13.3855 64 9.02703380584717 100.164020847333 84.2571 84.0000 10.7760 181 0.2737

Total number of rows: 54359

Table truncated, full table size 6955 Kbytes.




Supplementary file Size Download File type/resource
GSM128504.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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