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Sample GSM128507 Query DataSets for GSM128507
Status Public on Apr 30, 2007
Title 1676_d_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 16025.4912 207.4772 G 164.6019 16107.4912 6129.0000 17412.8125 165 14.4942932128906 97.8572537409787 82.6000 82.0000 10.5715 124 207.4772
1002 1 846.8283 10.9636 G 9.7857 926.8283 1020.0000 483.4094 101 11.3400707244873 94.7125677745298 80.3920 80.0000 9.8084 182 10.9636
1003 1 4.3226 0.0560 L 0.8580 85.3226 85.0000 10.1199 31 6.2825493812561 99.445618669394 82.5893 81.0000 12.2971 174 0.0560
1004 1 4.7188 0.0611 L 0.8802 83.7188 82.0000 13.0126 32 6.38307666778564 95.1098133370928 78.7800 79.0000 10.7399 156 0.0611
1005 1 6.6364 0.0859 L 0.9108 87.6364 87.0000 14.3750 88 10.5851345062256 96.2229034720684 81.0058 81.0000 10.1486 178 0.0859
1006 1 9.8438 0.1274 L 0.9300 87.8438 90.0000 10.6305 32 6.38307666778564 94.4508864206119 78.3293 78.0000 10.9673 173 0.1274
1007 1 27.0606 0.3503 G 1.1316 104.0606 101.0000 16.9838 66 9.16699600219727 91.9584951746011 77.8848 77.0000 9.9723 171 0.3503
1008 1 17988.3730 232.8900 G 178.9689 18071.3730 6646.0000 19032.8164 160 14.2729930877686 100.97494216212 84.5250 83.0000 11.9833 124 232.8900
1009 1 328.2391 4.2496 G 4.2229 409.2391 441.0000 142.9175 92 10.8230323791504 96.9099635152175 80.6868 81.0000 10.6066 188 4.2496
1010 1 918.4575 11.8910 G 10.5793 997.4575 1178.0000 527.2594 94 10.9400415420532 94.283821801937 79.0588 79.0000 10.1892 159 11.8910
1011 1 63.5206 0.8224 G 1.4959 142.5206 143.0000 24.8597 73 9.64087581634521 95.2736453627705 80.2000 79.0000 10.8491 144 0.8224
1012 1 50.7164 0.6566 G 1.3776 128.7164 127.0000 19.0285 67 9.23618125915527 93.4350375825078 77.8516 78.0000 10.2900 188 0.6566
1013 1 32.5968 0.4220 G 1.1333 112.5968 114.0000 13.6541 62 8.88486671447754 99.3495913648872 81.4725 80.0000 12.8997 188 0.4220
1014 1 22.6226 0.2929 G 1.0889 100.6226 99.0000 20.6199 53 8.21472454071045 92.40629373194 78.3559 78.0000 9.6042 183 0.2929
1015 1 17440.0586 225.7912 G 177.9431 17521.0586 6567.0000 19422.6816 192 15.6352806091309 98.4643973191508 82.1324 81.0000 11.6429 227 225.7912
1016 1 78.3125 1.0139 G 1.6604 157.3125 159.0000 26.2157 80 10.0925302505493 94.7441018851352 79.4540 79.0000 10.4961 180 1.0139
1017 1 13.7204 0.1776 L 0.9927 93.7204 93.0000 18.8048 93 10.8816947937012 94.4105558490018 79.6056 80.0000 9.6070 221 0.1776
1018 1 9.9118 0.1283 L 0.9476 89.9118 90.0000 11.5080 34 6.57952451705933 94.8843739314675 79.2486 80.0000 9.9229 179 0.1283
1019 1 8.2857 0.1073 L 0.9033 94.2857 92.0000 15.3298 35 6.67558097839355 104.380118066163 86.6630 86.0000 12.2534 187 0.1073
1020 1 17.7750 0.2301 L 0.9818 103.7750 104.0000 14.3396 40 7.13649654388428 105.698408060409 87.5580 86.0000 13.1323 187 0.2301

Total number of rows: 54359

Table truncated, full table size 6966 Kbytes.




Supplementary file Size Download File type/resource
GSM128507.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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