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Sample GSM128510 Query DataSets for GSM128510
Status Public on Apr 30, 2007
Title 1677_p_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 13910.7568 147.4252 G 144.7383 13992.7568 4874.0000 15902.9932 150 13.8197660446167 96.6762473947269 82.3083 82.0000 9.7842 124 147.4252
1002 1 820.6353 8.6970 G 9.3624 900.6353 1079.0000 465.9637 85 10.4031419754028 96.1973099761418 80.8268 80.0000 10.7982 185 8.6970
1003 1 16.3023 0.1728 L 0.9763 99.3023 93.0000 28.8948 43 7.3992772102356 101.714582673966 85.4171 83.0000 12.4764 181 0.1728
1004 1 14.9189 0.1581 L 0.9789 93.9189 96.0000 19.9613 37 6.86366271972656 95.9432082725226 79.5568 79.0000 11.2955 182 0.1581
1005 1 6.4945 0.0688 L 0.9077 86.4945 88.0000 13.4306 91 10.7640514373779 95.2851767730989 80.5024 80.0000 10.1901 217 0.0688
1006 1 19.7500 0.2093 G 1.0186 101.7500 105.0000 12.6644 40 7.13649654388428 99.8887600273098 83.5061 82.0000 11.9258 170 0.2093
1007 1 25.8276 0.2737 G 1.1377 101.8276 102.0000 14.5165 58 8.59348011016846 89.5013702476819 75.9945 76.0000 9.0009 188 0.2737
1008 1 16603.9395 175.9673 G 173.3897 16682.9395 7954.0000 17515.9609 149 13.7736234664917 96.216450446553 79.6750 79.0000 11.4776 124 175.9673
1009 1 389.8140 4.1312 G 5.1505 464.8140 528.0000 190.1558 86 10.4641580581665 90.245778600342 76.0000 75.0000 10.1639 187 4.1312
1010 1 687.3253 7.2842 G 8.1734 764.3253 918.0000 382.0916 83 10.2800235748291 93.5138967550941 78.4885 77.0000 11.0093 180 7.2842
1011 1 90.3867 0.9579 G 1.8430 165.3867 172.0000 34.8011 75 9.77204990386963 89.7383218459175 75.9890 75.0000 9.8255 187 0.9579
1012 1 67.9155 0.7198 G 1.5978 143.9155 150.0000 28.3731 71 9.50789165496826 90.0725913420238 75.8352 76.0000 9.3817 188 0.7198
1013 1 41.4688 0.4395 G 1.2862 117.4688 117.0000 15.3134 64 9.02703380584717 91.3331419049619 76.4780 76.0000 10.2221 188 0.4395
1014 1 59.5833 0.6315 G 1.5055 134.5833 137.0000 22.3469 72 9.57461452484131 89.3955388334085 74.9615 75.0000 9.5970 188 0.6315
1015 1 16213.7070 171.8317 G 175.5394 16289.7070 8646.0000 17097.6621 125 12.6156625747681 92.7980192189792 77.2802 76.0000 11.1987 188 171.8317
1016 1 61.4179 0.6509 G 1.4910 136.4179 139.0000 26.7527 67 9.23618125915527 91.4930194735497 76.1889 75.0000 10.9953 186 0.6509
1017 1 7.6882 0.0815 L 0.9267 84.6882 81.0000 17.8723 93 10.8816947937012 91.3831819340103 75.5587 77.0000 9.5888 185 0.0815
1018 1 4.6909 0.0497 L 0.8989 80.6909 82.0000 13.7045 55 8.36828422546387 89.7693972805705 75.4464 76.0000 9.1796 116 0.0497
1019 1 11.7222 0.1242 L 0.9785 84.7222 87.0000 7.7482 36 6.7702751159668 86.5861873698225 73.3791 73.0000 9.0575 188 0.1242
1020 1 42.4576 0.4500 G 1.3129 118.4576 120.0000 18.9775 59 8.66724491119385 90.2266485407302 76.1703 76.0000 9.4844 188 0.4500

Total number of rows: 54359

Table truncated, full table size 6952 Kbytes.




Supplementary file Size Download File type/resource
GSM128510.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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