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Sample GSM128511 Query DataSets for GSM128511
Status Public on Apr 30, 2007
Title 1677_d_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 11543.7178 133.8358 G 125.1261 11619.7178 3233.0000 13099.8262 220 16.7365684509277 92.8640506129985 77.1327 76.0000 11.2427 234 133.8358
1002 1 909.0784 10.5397 G 10.9009 985.0784 1121.0000 490.4482 104 11.5072546005249 90.3663041765638 76.9195 76.0000 9.5775 180 10.5397
1003 1 4.2093 0.0488 L 0.8586 83.2093 82.0000 12.5736 86 10.4641580581665 96.9103059682822 79.0901 79.0000 11.9402 230 0.0488
1004 1 11.3016 0.1310 L 0.9546 91.3016 90.0000 14.5773 63 8.95623207092285 95.6451236166988 79.7586 80.0000 10.4301 120 0.1310
1005 1 9.4063 0.1091 L 0.9444 84.4063 85.0000 10.0867 32 6.38307666778564 89.3774800229512 73.9833 75.0000 9.5850 186 0.1091
1006 1 22.4815 0.2606 G 1.0986 94.4815 95.0000 13.8132 54 8.29185962677002 85.9992204854344 73.4494 72.0000 9.3328 184 0.2606
1007 1 16.6327 0.1928 G 1.0007 89.6327 91.0000 13.0379 49 7.89865398406982 89.5723117430615 73.0549 73.0000 11.0482 188 0.1928
1008 1 11965.3184 138.7237 G 129.2011 12041.3184 3743.0000 13452.7305 211 16.3906536102295 93.1982572061728 76.8584 76.0000 11.4655 234 138.7237
1009 1 241.1354 2.7957 G 3.5134 316.1354 325.0000 105.0576 96 11.0558128356934 89.9792520209346 76.1538 75.0000 9.9862 188 2.7957
1010 1 1342.4857 15.5645 G 15.6023 1417.4857 1567.0000 822.6214 107 11.6720447540283 90.850931799646 75.5055 75.0000 10.5673 188 15.5645
1011 1 92.3333 1.0705 G 1.8555 165.3333 168.0000 29.3794 84 10.3417663574219 89.1040615652986 74.0330 73.0000 10.7360 188 1.0705
1012 1 143.2651 1.6610 G 2.4432 217.2651 225.0000 55.5568 83 10.2800235748291 88.9267063589803 74.1154 74.0000 9.9511 188 1.6610
1013 1 40.8289 0.4734 G 1.2986 113.8289 112.0000 17.5315 76 9.83698177337646 87.6560640318433 73.0165 73.0000 9.7707 188 0.4734
1014 1 29.9365 0.3471 G 1.1637 101.9365 99.0000 14.1375 63 8.95623207092285 87.6000831022547 72.7790 72.0000 10.4001 187 0.3471
1015 1 13193.9141 152.9678 G 140.7718 13270.9141 4496.0000 14289.5869 247 17.7338714599609 94.2725086425058 77.4387 77.0000 11.5150 220 152.9678
1016 1 99.7320 1.1563 G 1.9375 175.7320 169.0000 30.7435 97 11.1132459640503 90.6987669824093 76.3681 76.0000 9.7992 188 1.1563
1017 1 7.9189 0.0918 L 0.9080 84.9189 84.0000 13.3445 37 6.86366271972656 93.5253699239687 77.2253 77.0000 11.0169 188 0.0918
1018 1 6.6170 0.0767 L 0.9133 82.6170 82.0000 12.5088 94 10.9400415420532 90.4629763435308 75.3463 76.0000 9.6420 213 0.0767
1019 1 10.3529 0.1200 L 0.9544 86.3529 84.0000 15.7739 34 6.57952451705933 90.4808547842227 75.7284 76.0000 9.6539 168 0.1200
1020 1 44.8519 0.5200 G 1.3096 122.8519 121.0000 20.0445 81 10.1554126739502 93.8061310647532 78.5569 78.0000 10.5374 173 0.5200

Total number of rows: 54359

Table truncated, full table size 6968 Kbytes.




Supplementary file Size Download File type/resource
GSM128511.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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