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Sample GSM128515 Query DataSets for GSM128515
Status Public on Mar 23, 2015
Title 1846_d_1
Sample type RNA
 
Source name biopsy, during treatment, chemoradiotherapy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Mar 23, 2015
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE6213 Cervical cancer samples in NIRS

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 15205.3818 132.9262 G 169.1424 15283.3818 4046.0000 17217.5820 154 14.0028171539307 90.358094974846 78.3000 78.0000 8.2387 124
1002 1 1204.6932 10.5315 G 14.0287 1281.6932 1529.0000 704.1468 88 10.5851345062256 91.3620575132128 78.1319 77.0000 9.5747 188
1003 1 4.7912 0.0419 L 0.9044 84.7912 84.0000 10.6694 91 10.7640514373779 93.7491068016983 80.0622 80.0000 9.1661 199
1004 1 1.7576 0.0154 L 0.8560 79.7576 78.0000 10.6145 33 6.48204469680786 93.1745754325403 78.9171 78.0000 10.1164 187
1005 1 11.2500 0.0983 L 0.9744 88.2500 91.0000 13.7200 40 7.13649654388428 90.5693709133075 77.5402 77.0000 9.0462 180
1006 1 24.5918 0.2150 G 1.1262 102.5918 101.0000 10.7910 49 7.89865398406982 91.0955285953433 78.7527 78.0000 8.7304 188
1007 1 18.4468 0.1613 G 1.0598 96.4468 96.0000 11.4943 47 7.73577785491943 91.0070465533261 79.1648 78.0000 8.6714 188
1008 1 18116.1699 158.3725 G 191.7297 18198.1699 7515.0000 19490.9121 160 14.2729930877686 94.915770832385 81.9750 82.0000 8.6105 124
1009 1 364.5555 3.1870 G 4.7298 444.5555 482.0000 172.3946 90 10.7047443389893 93.9900485334365 80.1538 80.0000 9.3267 188
1010 1 580.8095 5.0775 G 7.1814 657.8095 811.0000 332.2106 84 10.3417663574219 91.5993448000626 78.0385 77.0000 9.7329 188
1011 1 62.1250 0.5431 G 1.5245 141.1250 142.0000 22.5203 72 9.57461452484131 92.5743527377507 79.4396 79.0000 9.0496 188
1012 1 56.8657 0.4971 G 1.4669 135.8657 136.0000 23.3627 67 9.23618125915527 92.6217671134366 79.1000 79.0000 9.0812 186
1013 1 34.3429 0.3002 G 1.2307 113.3429 112.0000 14.1642 70 9.44069766998291 92.0995248410591 78.8729 79.0000 8.7330 187
1014 1 28.0000 0.2448 G 1.1518 108.0000 107.0000 11.6149 64 9.02703380584717 93.7670813946219 79.6154 80.0000 9.1781 188
1015 1 17606.7090 153.9188 G 190.4148 17685.7090 13333.0000 17533.6875 126 12.6660251617432 92.8799098391028 79.5220 79.0000 9.2533 188
1016 1 55.1270 0.4819 G 1.4270 133.1270 132.0000 20.9629 63 8.95623207092285 93.2934779948123 79.6868 78.0000 10.1957 188
1017 1 25.2000 0.2203 G 1.1178 105.2000 105.0000 12.6665 50 7.97884559631348 94.1164156434247 79.9945 80.0000 9.4109 188
1018 1 3.2857 0.0287 L 0.8996 81.2857 80.0000 11.0984 35 6.67558097839355 90.3612073640237 78.3571 78.0000 8.2408 188
1019 1 12.0606 0.1054 L 0.9693 91.0606 93.0000 11.2464 33 6.48204469680786 93.9450251846302 80.1319 79.0000 9.9633 188
1020 1 18.1190 0.1584 G 1.0469 96.1190 94.0000 10.8676 42 7.3127326965332 91.8169675514504 79.6978 78.0000 9.2113 188

Total number of rows: 54359

Table truncated, full table size 6576 Kbytes.




Supplementary file Size Download File type/resource
GSM128515.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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