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Sample GSM128517 Query DataSets for GSM128517
Status Public on Mar 23, 2015
Title 1850_p_1
Sample type RNA
 
Source name biopsy, prior to treatment, chemoradiotherapy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Mar 23, 2015
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE6213 Cervical cancer samples in NIRS

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 15448.8643 159.9127 G 123.1957 15537.8643 8690.0000 15773.2480 135 13.1105813980103 126.123397222024 94.4167 89.0000 24.7489 124
1002 1 1166.3793 12.0733 G 9.8290 1246.3793 1416.0000 644.9540 87 10.5248203277588 126.806136884139 86.0276 80.0000 31.2041 187
1003 1 29.4615 0.3050 G 1.0020 111.4615 92.0000 43.8119 39 7.04672574996948 111.241883925754 85.1534 82.0000 19.4946 182
1004 1 130.6857 1.3527 G 1.2279 212.6857 103.0000 302.8849 35 6.67558097839355 173.204833247336 94.0972 82.0000 60.8032 150
1005 1 6.2235 0.0644 L 0.9027 85.2235 84.0000 12.7661 85 10.4031419754028 94.4109860651678 78.9355 79.0000 10.2740 192
1006 1 12.5773 0.1302 L 0.9703 91.5773 91.0000 15.4405 97 11.1132459640503 94.3822274861137 79.0307 79.0000 10.2548 236
1007 1 23.8333 0.2467 G 1.0885 104.8333 105.0000 13.9265 42 7.3127326965332 96.3106030555034 80.6044 81.0000 10.2071 188
1008 1 14979.7559 155.0569 G 154.1701 15061.7559 6256.0000 16755.9160 170 14.7122640609741 97.6956969788865 81.9750 82.0000 10.4638 124
1009 1 537.3406 5.5621 G 6.5115 617.3406 705.0000 283.5952 91 10.7640514373779 94.807955871503 80.5409 80.0000 9.8720 165
1010 1 1443.9788 14.9468 G 16.4593 1521.9788 1912.0000 966.4645 94 10.9400415420532 92.4694793027085 78.3898 78.0000 9.6463 183
1011 1 92.6438 0.9590 G 1.8355 170.6438 174.0000 32.8335 73 9.64087581634521 92.9677289672543 78.6429 78.0000 9.9785 188
1012 1 52.1364 0.5397 G 1.4215 130.1364 129.0000 24.5325 66 9.16699600219727 91.5514582854783 78.6264 78.0000 9.0343 188
1013 1 46.7910 0.4843 G 1.3279 126.7910 127.0000 17.2977 67 9.23618125915527 95.4851402875147 80.2308 80.0000 10.3234 188
1014 1 149.5185 1.5477 G 2.4538 227.5185 235.0000 62.6728 81 10.1554126739502 92.7221814563771 79.3626 78.0000 9.8148 188
1015 1 13285.6436 137.5210 G 136.7803 13366.6436 4701.0000 15324.0645 148 13.7273254394531 97.7234744365036 82.7583 81.0000 11.1490 124
1016 1 77.6667 0.8039 G 1.6177 158.6667 164.0000 28.7513 63 8.95623207092285 98.0834498096205 81.4972 81.0000 11.3890 187
1017 1 36.8136 0.3811 G 1.2395 117.8136 116.0000 14.5526 59 8.66724491119385 95.0470556566067 80.6648 81.0000 9.3647 185
1018 1 34.5849 0.3580 G 1.2068 114.5849 109.0000 18.4722 53 8.21472454071045 94.9527449979566 80.5055 80.0000 9.9685 188
1019 1 25.4872 0.2638 G 1.0665 106.4872 96.0000 42.8748 78 9.96557521820068 99.8503977565387 81.8250 81.0000 12.5669 124
1020 1 36.8113 0.3810 G 1.1878 117.8113 114.0000 19.4170 53 8.21472454071045 99.1876347583135 82.1934 81.0000 12.1251 187

Total number of rows: 54359

Table truncated, full table size 6580 Kbytes.




Supplementary file Size Download File type/resource
GSM128517.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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