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Sample GSM128518 Query DataSets for GSM128518
Status Public on Mar 23, 2015
Title 1850_p_2
Sample type RNA
 
Source name biopsy, prior to treatment, chemoradiotherapy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Mar 23, 2015
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE6213 Cervical cancer samples in NIRS

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 14258.9795 172.8927 G 146.2850 14337.9795 6569.0000 15546.5869 145 13.5874843597412 98.0139975915139 79.4500 79.0000 12.6760 124
1002 1 1113.5699 13.5022 G 13.3107 1188.5699 1440.0000 677.2672 93 10.8816947937012 89.2942499161012 75.4530 75.0000 9.5295 187
1003 1 15.9487 0.1934 G 1.0049 92.9487 93.0000 12.7721 39 7.04672574996948 92.4992201079748 77.2632 77.0000 10.3328 177
1004 1 32.1961 0.3904 G 1.1790 108.1961 107.0000 13.1403 51 8.0582389831543 91.7712513643881 76.0726 76.0000 10.5142 185
1005 1 5.6452 0.0684 L 0.9077 80.6452 81.0000 8.1658 31 6.2825493812561 88.845480330497 75.1111 75.0000 9.2303 186
1006 1 18.8980 0.2291 G 1.0473 94.8980 95.0000 11.5939 49 7.89865398406982 90.6145168219174 75.6264 76.0000 9.7430 188
1007 1 22.0488 0.2673 G 1.0817 96.0488 96.0000 9.8475 41 7.22515201568604 88.7954267657985 74.5549 74.0000 9.8636 188
1008 1 16029.7988 194.3643 G 160.3418 16110.7988 7923.0000 17679.8027 156 14.093451499939 100.477858395557 80.3167 81.0000 12.9852 124
1009 1 438.4091 5.3158 G 5.6721 514.4091 574.0000 206.6656 88 10.5851345062256 90.6916860961018 75.3371 76.0000 9.7945 184
1010 1 1589.2500 19.2699 G 18.4610 1664.2500 2060.0000 1043.5021 96 11.0558128356934 90.1493811173053 75.8222 75.0000 10.0996 186
1011 1 103.8312 1.2590 G 1.9664 179.8312 191.0000 44.0208 77 9.90148735046387 91.450608813681 76.0141 76.0000 10.3004 146
1012 1 294.8766 3.5754 G 4.1104 370.8766 425.0000 156.0268 81 10.1554126739502 90.2283586255411 76.0440 76.0000 9.4856 188
1013 1 72.7105 0.8816 G 1.6307 147.7105 147.0000 29.4979 76 9.83698177337646 90.5828560517189 75.3242 75.0000 10.3886 188
1014 1 122.2250 1.4820 G 2.1985 199.2250 204.0000 47.6700 80 10.0925302505493 90.6167524421002 76.1264 77.0000 9.0778 188
1015 1 13342.2168 161.7768 G 144.9299 13419.2168 3592.0000 15210.3418 145 13.5874843597412 92.5910850203503 77.1167 77.0000 10.3941 124
1016 1 53.9375 0.6540 G 1.4268 130.9375 130.0000 19.8352 64 9.02703380584717 91.7681502380335 76.5989 77.0000 9.8454 188
1017 1 11.5676 0.1403 L 0.9601 88.5676 88.0000 12.0910 37 6.86366271972656 92.2439659865251 76.3791 77.0000 10.1626 188
1018 1 16.1667 0.1960 G 1.0217 92.1667 92.0000 15.3327 42 7.3127326965332 90.2114921842767 77.2363 76.0000 9.4743 188
1019 1 16.9767 0.2058 G 1.0154 92.9767 95.0000 12.6335 43 7.3992772102356 91.5622291608287 77.4066 76.0000 10.3748 188
1020 1 39.3864 0.4776 G 1.1976 118.3864 102.0000 72.5688 44 7.48482084274292 98.8551408623151 80.4286 79.0000 13.2368 188

Total number of rows: 54359

Table truncated, full table size 6563 Kbytes.




Supplementary file Size Download File type/resource
GSM128518.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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