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Sample GSM128520 Query DataSets for GSM128520
Status Public on Mar 23, 2015
Title 1850_d_2
Sample type RNA
 
Source name biopsy, during treatment, chemoradiotherapy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Mar 23, 2015
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE6213 Cervical cancer samples in NIRS

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 13812.4824 191.3928 G 147.4064 13890.4824 4891.0000 15198.6729 201 15.9975357055664 94.2325680288393 79.1070 78.0000 10.8217 223
1002 1 1007.0265 13.9539 G 11.8171 1083.0265 1262.0000 577.5142 115 12.1005182266235 91.6493101741266 75.9794 76.0000 10.4329 101
1003 1 -5.3103 -0.0736 L 0.7651 75.6897 75.0000 8.9176 29 6.07650756835938 98.9270335966326 80.8299 81.0000 11.9514 153
1004 1 21.6522 0.3000 G 1.0494 101.6522 102.0000 12.3398 46 7.65303993225098 96.8624618656423 79.0944 80.0000 11.2416 186
1005 1 5.0377 0.0698 L 0.8812 82.0377 82.0000 12.7190 53 8.21472454071045 93.0963918611489 77.3153 77.0000 10.7309 115
1006 1 10.1354 0.1404 L 0.9555 85.1354 85.0000 12.1669 96 11.0558128356934 89.1033263672716 75.0089 75.0000 9.4022 232
1007 1 12.4375 0.1723 L 0.9810 88.4375 90.0000 12.0076 32 6.38307666778564 90.1485158230088 76.4444 76.0000 9.4323 186
1008 1 13883.9414 192.3830 G 146.0374 13961.9414 5011.0000 15410.5957 208 16.2737159729004 95.6052254853846 78.1855 78.0000 11.7368 229
1009 1 379.7959 5.2626 G 4.6381 460.7959 514.0000 156.1530 100 11.2837915420532 99.3494621290224 80.9000 81.0000 12.2330 186
1010 1 1353.5909 18.7561 G 15.4020 1429.5909 1733.0000 825.4238 112 11.9416427612305 92.8186616788061 74.6907 76.0000 11.2124 101
1011 1 63.8052 0.8841 G 1.5455 138.8052 135.0000 20.1037 77 9.90148735046387 89.8135465936053 74.9318 75.0000 9.8757 182
1012 1 154.8415 2.1456 G 2.5167 229.8415 241.0000 51.6422 82 10.2179079055786 91.3282526202904 74.8167 75.0000 10.8855 186
1013 1 36.2500 0.5023 G 1.2442 111.2500 111.0000 13.2425 68 9.30485343933105 89.41561389979 74.3187 75.0000 9.6104 188
1014 1 133.1932 1.8456 G 2.2756 209.1932 212.0000 43.6483 88 10.5851345062256 91.9277129615049 76.3407 76.0000 10.6185 188
1015 1 15447.7910 214.0525 G 158.7802 15527.7910 6982.0000 16373.2686 234 17.2608814239502 97.7942451435831 79.9533 80.0000 11.8628 222
1016 1 34.9481 0.4843 G 1.1794 112.9481 111.0000 13.8666 77 9.90148735046387 95.765943345813 79.8634 78.0000 11.8440 167
1017 1 13.2769 0.1840 L 0.9860 88.2769 88.0000 13.2183 65 9.09728336334229 89.5340455717482 75.7788 75.0000 9.6894 108
1018 1 1.9753 0.0274 L 0.7283 81.9753 82.0000 9.7866 81 10.1554126739502 112.564089754171 82.1762 80.0000 21.7094 218
1019 1 5.6364 0.0781 L 0.8750 79.6364 79.0000 12.0046 33 6.48204469680786 91.0134356349401 75.4012 74.0000 11.3423 168
1020 1 9.2787 0.1286 L 0.9245 87.2787 86.0000 14.4473 61 8.81292343139648 94.4081639995149 78.7658 78.0000 10.9388 115

Total number of rows: 54359

Table truncated, full table size 6587 Kbytes.




Supplementary file Size Download File type/resource
GSM128520.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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