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Sample GSM128522 Query DataSets for GSM128522
Status Public on Mar 23, 2015
Title 1986_p_2
Sample type RNA
 
Source name biopsy, prior to treatment, chemoradiotherapy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Mar 23, 2015
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE6213 Cervical cancer samples in NIRS

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 18504.3672 161.5613 G 145.2016 18613.3672 10086.0000 19413.3125 163 14.4061803817749 128.1897818764 110.0333 109.0000 12.7932 124
1002 1 1283.6200 11.2073 G 11.0977 1391.6200 1591.0000 664.5692 102 11.396071434021 125.397583619195 108.9116 108.0000 11.5984 187
1003 1 20.6078 0.1799 L 0.9945 129.6078 132.0000 12.5917 51 8.0582389831543 130.322004823654 110.3681 109.0000 14.2147 188
1004 1 95.0182 0.8296 G 1.6131 201.0182 140.0000 206.6842 55 8.36828422546387 124.613518784925 106.9945 106.0000 12.4090 188
1005 1 32.2885 0.2819 G 1.0781 139.2885 137.0000 16.2272 52 8.1368579864502 129.19500020732 108.3901 107.0000 14.7967 188
1006 1 31.6452 0.2763 G 1.0796 140.6452 140.0000 15.2285 62 8.88486671447754 130.272430621108 109.2912 109.0000 14.1816 188
1007 1 36.2537 0.3165 G 1.1321 146.2537 147.0000 15.1286 67 9.23618125915527 129.182699663151 110.6868 110.0000 12.7885 188
1008 1 17422.0430 152.1116 G 133.2477 17534.0430 7882.0000 18560.2129 141 13.3987598419189 131.589854933055 111.5750 112.0000 13.0599 124
1009 1 522.6429 4.5632 G 4.9451 630.6429 707.0000 250.1765 84 10.3417663574219 127.529954478727 107.4641 108.0000 13.0200 187
1010 1 843.6786 7.3661 G 7.5151 952.6786 1055.0000 497.7398 84 10.3417663574219 126.768198305178 107.8791 109.0000 11.8455 188
1011 1 118.6133 1.0356 G 1.7862 228.6133 237.0000 51.4006 75 9.77204990386963 127.987357082273 109.7802 110.0000 11.9916 188
1012 1 143.4079 1.2521 G 2.0034 252.4079 270.0000 67.0521 76 9.83698177337646 125.990435596414 108.3736 109.0000 11.3270 188
1013 1 83.1176 0.7257 G 1.5060 190.1176 191.0000 30.0600 68 9.30485343933105 126.239043585658 107.1923 107.0000 12.8260 188
1014 1 91.5195 0.7991 G 1.5924 199.5195 201.0000 34.9807 77 9.90148735046387 125.294335290302 108.5275 108.0000 11.5296 188
1015 1 16786.6758 146.5642 G 135.6298 16892.6758 7664.0000 18033.0020 141 13.3987598419189 124.549905480404 107.9833 106.0000 12.3666 124
1016 1 67.2273 0.5870 G 1.3757 176.2273 174.0000 23.9784 66 9.16699600219727 128.096095105206 108.3867 109.0000 12.7307 187
1017 1 54.0000 0.4715 G 1.2833 162.0000 160.0000 22.0209 63 8.95623207092285 126.234074234809 108.5548 108.0000 12.1561 161
1018 1 31.4091 0.2742 G 1.0981 136.4091 137.0000 15.6500 44 7.48482084274292 124.218977886662 106.3611 105.0000 12.8127 186
1019 1 23.8704 0.2084 G 1.0464 130.8704 132.0000 14.6351 54 8.29185962677002 125.063372169323 106.9725 107.0000 12.0422 188
1020 1 39.1552 0.3419 G 1.1649 144.1552 143.0000 17.8353 58 8.59348011016846 123.74551138223 106.5934 105.0000 12.4970 188

Total number of rows: 54359

Table truncated, full table size 6773 Kbytes.




Supplementary file Size Download File type/resource
GSM128522.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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