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Sample GSM128525 Query DataSets for GSM128525
Status Public on Apr 30, 2007
Title 2320_p_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (2)
GSE3578 Activated Cell Death Pathway
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 6159.8848 98.2414 G 61.3144 6246.8848 4521.0000 5783.9028 158 14.1835060119629 101.882795270241 87.3000 87.0000 9.9219 124 98.2414
1002 1 383.9775 6.1239 G 4.7347 468.9775 503.0000 157.9454 89 10.6451082229614 99.0518066643228 85.7747 85.0000 9.3679 188 6.1239
1003 1 18.8929 0.3013 G 1.0556 102.8929 104.0000 11.1782 56 8.444016456604 97.4756939201683 84.4451 84.0000 8.9838 188 0.3013
1004 1 21.5079 0.3430 G 1.0866 107.5079 106.0000 11.2643 63 8.95623207092285 98.9439252756845 85.4199 86.0000 8.6293 187 0.3430
1005 1 18.0175 0.2874 G 1.0446 105.0175 104.0000 13.4340 57 8.51907634735107 100.535347956086 86.3901 87.0000 9.0236 188 0.2874
1006 1 27.6724 0.4413 G 1.1329 111.6724 111.0000 10.6356 58 8.59348011016846 98.5710960042544 84.2265 84.0000 9.7141 187 0.4413
1007 1 22.3158 0.3559 G 1.0850 106.3158 106.0000 9.9510 57 8.51907634735107 97.9876518007333 83.1923 84.0000 9.3251 188 0.3559
1008 1 6145.3052 98.0089 G 65.2050 6227.3052 3443.0000 6051.5430 169 14.6689291000366 95.5034890101854 83.6218 82.0000 9.0023 123 98.0089
1009 1 287.1444 4.5795 G 3.8269 370.1444 398.0000 126.3809 90 10.7047443389893 96.7229002074015 83.4396 83.0000 9.1486 188 4.5795
1010 1 234.0000 3.7320 G 3.3401 316.0000 346.0000 112.5678 82 10.2179079055786 94.607390697026 82.9945 82.0000 8.4049 188 3.7320
1011 1 76.1392 1.2143 G 1.6362 161.1392 161.0000 23.8379 79 10.0292530059814 98.4815761669632 84.9670 85.0000 8.9877 188 1.2143
1012 1 33.3016 0.5311 G 1.2092 116.3016 114.0000 14.7257 63 8.95623207092285 96.1770968195093 85.0659 83.0000 8.7847 188 0.5311
1013 1 24.6765 0.3936 G 1.1205 108.6765 110.0000 10.0724 68 9.30485343933105 96.9849515731789 84.3591 84.0000 8.6566 187 0.3936
1014 1 30.5000 0.4864 G 1.1847 116.5000 115.0000 11.9937 70 9.44069766998291 98.3404556088121 85.7692 86.0000 8.2270 188 0.4864
1015 1 6325.7515 100.8868 G 65.5282 6411.7515 2857.0000 6447.2495 175 14.9270534515381 97.8472341659186 85.9500 86.0000 7.8982 124 100.8868
1016 1 20.9492 0.3341 G 1.0572 108.9492 108.0000 12.8675 59 8.66724491119385 103.058449896376 88.0500 88.0000 10.0390 186 0.3341
1017 1 39.5696 0.6311 G 1.2599 124.5696 123.0000 15.6073 79 10.0292530059814 98.8734954886659 86.0055 85.0000 9.2490 188 0.6311
1018 1 18.0370 0.2877 G 1.0575 105.0370 106.0000 11.8274 54 8.29185962677002 99.3211375469629 87.0824 87.0000 8.2141 188 0.2877
1019 1 19.6271 0.3130 G 1.0569 106.6271 107.0000 12.3904 59 8.66724491119385 100.884186553379 87.1215 87.0000 9.2561 187 0.3130
1020 1 27.7069 0.4419 G 1.1254 118.7069 118.0000 11.4786 58 8.59348011016846 105.482108829493 90.4124 91.0000 9.6547 183 0.4419

Total number of rows: 54359

Table truncated, full table size 6945 Kbytes.




Supplementary file Size Download File type/resource
GSM128525.TXT.gz 2.5 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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