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Sample GSM128532 Query DataSets for GSM128532
Status Public on Apr 30, 2007
Title 2509_d_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 6596.5220 129.6036 G 63.5569 6687.5220 4177.0000 6350.2661 140 13.3511619567871 105.220977744102 90.5250 91.0000 9.4806 124 129.6036
1002 1 192.4756 3.7816 G 2.6498 285.4756 320.0000 83.4543 82 10.2179079055786 107.73463071444 92.5989 93.0000 9.8231 188 3.7816
1003 1 30.1667 0.5927 G 1.1333 121.1667 120.0000 12.3360 54 8.29185962677002 106.913258881181 91.9560 91.0000 10.6088 188 0.5927
1004 1 29.7206 0.5839 G 1.1601 120.7206 120.0000 11.9605 68 9.30485343933105 104.061551703196 91.0234 91.0000 8.7077 177 0.5839
1005 1 26.3684 0.5181 G 1.1174 119.3684 117.0000 20.3992 57 8.51907634735107 106.827118184781 92.1955 93.0000 9.2181 185 0.5181
1006 1 29.0345 0.5704 G 1.1500 122.0345 123.0000 11.6115 58 8.59348011016846 106.114954576929 92.4505 93.0000 8.7433 188 0.5704
1007 1 33.6721 0.6616 G 1.1789 124.6721 122.0000 14.8365 61 8.81292343139648 105.756944388967 92.0165 91.0000 9.8380 188 0.6616
1008 1 7024.0000 138.0024 G 67.4309 7116.0000 4283.0000 6613.1714 141 13.3987598419189 105.530241096029 92.6417 92.0000 9.0202 124 138.0024
1009 1 290.3210 5.7040 G 3.5602 383.3210 427.0000 132.5020 81 10.1554126739502 107.66906339053 93.0351 93.0000 9.7794 177 5.7040
1010 1 124.2676 2.4415 G 2.0125 217.2676 230.0000 57.5715 71 9.50789165496826 107.957394990527 92.6763 93.0000 9.9716 179 2.4415
1011 1 108.4079 2.1299 G 1.8877 197.4079 198.0000 41.6992 76 9.83698177337646 104.578172078776 90.3626 89.0000 10.3854 188 2.1299
1012 1 36.6552 0.7202 G 1.1981 129.6552 128.0000 14.5312 58 8.59348011016846 108.216252938911 92.5714 93.0000 10.1442 188 0.7202
1013 1 32.0299 0.6293 G 1.1634 121.0299 122.0000 13.6272 67 9.23618125915527 104.028534913433 89.4670 89.0000 10.0190 188 0.6293
1014 1 31.3509 0.6160 G 1.1757 120.3509 117.0000 13.4523 57 8.51907634735107 102.362724169586 89.5989 89.0000 8.9085 188 0.6160
1015 1 7019.0415 137.9050 G 67.9185 7110.0415 5414.0000 6670.8296 147 13.6808700561523 104.68485044963 91.0000 91.0000 9.1232 124 137.9050
1016 1 62.9296 1.2364 G 1.4690 153.9296 157.0000 21.9303 71 9.50789165496826 104.785318279578 91.4011 91.0000 9.1902 188 1.2364
1017 1 38.9189 0.7647 G 1.2364 128.9189 129.0000 14.6663 74 9.70668506622314 104.266256691329 90.1813 90.0000 9.5108 188 0.7647
1018 1 22.9796 0.4515 G 1.0688 112.9796 114.0000 12.8007 49 7.89865398406982 105.708087580507 90.7418 90.0000 10.4721 188 0.4515
1019 1 20.8621 0.4099 G 1.0607 110.8621 111.0000 11.7700 58 8.59348011016846 104.513742133894 91.6868 90.0000 9.6758 188 0.4099
1020 1 29.4179 0.5780 G 1.1426 121.4179 120.0000 13.4555 67 9.23618125915527 106.2675113169 93.0220 92.0000 9.5117 188 0.5780

Total number of rows: 54359

Table truncated, full table size 6934 Kbytes.




Supplementary file Size Download File type/resource
GSM128532.TXT.gz 2.5 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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