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Sample GSM128535 Query DataSets for GSM128535
Status Public on Apr 30, 2007
Title 2512_d_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 6791.0908 148.4520 G 66.2983 6880.0908 4464.0000 6133.7646 145 13.5874843597412 103.774791023411 88.8833 89.0000 9.8499 124 148.4520
1002 1 220.9778 4.8305 G 3.0270 307.9778 320.0000 94.5806 90 10.7047443389893 101.742600962061 88.0385 87.0000 9.8284 188 4.8305
1003 1 25.3103 0.5533 G 1.1045 113.3103 114.0000 10.8202 58 8.59348011016846 102.586118913916 87.6484 88.0000 9.7241 188 0.5533
1004 1 30.1017 0.6580 G 1.1463 118.1017 118.0000 13.2226 59 8.66724491119385 103.029392910909 88.5220 88.0000 10.0196 188 0.6580
1005 1 22.9508 0.5017 G 1.0887 112.9508 111.0000 12.1378 61 8.81292343139648 103.749416786029 90.2253 90.0000 9.1663 188 0.5017
1006 1 28.4844 0.6227 G 1.1502 116.4844 117.0000 13.3475 64 9.02703380584717 101.269001506067 87.7308 88.0000 8.8460 188 0.6227
1007 1 23.1356 0.5057 G 1.0845 112.1356 111.0000 12.9843 59 8.66724491119385 103.397051914765 88.4176 89.0000 9.5980 188 0.5057
1008 1 6999.7363 153.0130 G 69.1040 7087.7363 4589.0000 6420.4922 150 13.8197660446167 102.566206658916 87.9833 88.0000 9.7108 124 153.0130
1009 1 69.2535 1.5139 G 1.5528 158.2535 160.0000 25.4070 71 9.50789165496826 101.912420650978 89.0497 89.0000 8.6083 187 1.5139
1010 1 146.9605 3.2125 G 2.2872 234.9605 256.0000 61.7935 76 9.83698177337646 102.728907337199 87.4121 88.0000 9.8193 188 3.2125
1011 1 27.6857 0.6052 G 1.1470 115.6857 115.0000 13.4415 70 9.44069766998291 100.857030554488 88.3462 88.0000 8.5714 188 0.6052
1012 1 38.6909 0.8458 G 1.2358 126.6909 125.0000 12.9977 55 8.36828422546387 102.517213993755 87.6099 88.0000 9.6781 188 0.8458
1013 1 29.7222 0.6497 L 0.9113 116.7222 115.0000 16.3497 36 6.7702751159668 128.082287703217 93.5714 87.0000 27.3882 188 0.6497
1014 1 238.9305 5.2230 G 2.2183 326.9305 333.0000 64.6846 72 9.57461452484131 147.38052389694 99.9890 88.0000 39.5870 188 5.2230
1015 1 6423.2813 140.4118 G 65.1275 6509.2813 4405.0000 6171.2734 162 14.3619222640991 99.9467704669972 87.2417 86.0000 9.2978 124 140.4118
1016 1 36.9710 0.8082 G 1.2310 122.9710 120.0000 15.8772 69 9.37302112579346 99.8968109506177 86.5275 86.0000 9.2645 188 0.8082
1017 1 31.6842 0.6926 G 1.1845 115.6842 116.0000 14.3813 76 9.83698177337646 97.6628064663613 84.1703 84.0000 9.1085 188 0.6926
1018 1 26.2576 0.5740 G 1.1389 113.2576 114.0000 12.8915 66 9.16699600219727 99.4442030288573 86.7692 87.0000 8.2961 188 0.5740
1019 1 20.7164 0.4529 G 1.0683 108.7164 108.0000 13.5226 67 9.23618125915527 101.767229207408 87.0934 88.0000 9.1782 188 0.4529
1020 1 20.7021 0.4525 G 1.0370 111.7021 112.0000 13.3208 47 7.73577785491943 107.716270372711 90.6154 91.0000 11.1442 188 0.4525

Total number of rows: 54359

Table truncated, full table size 6924 Kbytes.




Supplementary file Size Download File type/resource
GSM128535.TXT.gz 2.5 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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