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Sample GSM128537 Query DataSets for GSM128537
Status Public on Sep 28, 2010
Title 2773_p_1
Sample type RNA
 
Source name biopsy, prior to treatment, chemoradiotherapy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Sep 28, 2010
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 8181.6328 175.7574 G 72.3769 8280.6328 5990.0000 7632.7578 160 14.2729930877686 114.409897598545 99.1000 99.0000 10.2733 124
1002 1 246.8750 5.3034 G 3.0382 342.8750 372.0000 97.5488 88 10.5851345062256 112.853423449376 96.6813 96.0000 11.2356 188
1003 1 31.4545 0.6757 G 1.1361 128.4545 129.0000 14.0520 66 9.16699600219727 113.064611328298 97.2857 97.0000 10.7097 188
1004 1 34.9697 0.7512 G 1.1689 129.9697 128.0000 11.3551 66 9.16699600219727 111.185210778389 95.6724 95.0000 10.7901 180
1005 1 25.4032 0.5457 G 1.1049 122.4032 121.0000 15.7475 62 8.88486671447754 110.777827489819 98.1044 97.0000 9.1852 188
1006 1 34.5909 0.7431 G 1.1850 131.5909 132.0000 15.1247 66 9.16699600219727 111.044808958874 97.3702 97.0000 9.3632 187
1007 1 29.7647 0.6394 G 1.1075 127.7647 129.0000 15.4131 68 9.30485343933105 115.366650294405 97.5284 98.0000 11.5778 182
1008 1 8443.3672 181.3799 G 76.7213 8540.3672 4221.0000 8357.5752 168 14.6254653930664 111.316804247728 97.2083 97.0000 9.5445 124
1009 1 173.0114 3.7166 G 2.4672 267.0114 275.0000 68.4365 88 10.5851345062256 108.225563002992 94.2184 94.0000 9.4837 180
1010 1 124.3590 2.6715 G 2.0140 218.3590 219.0000 47.5421 78 9.96557521820068 108.421049167372 94.9218 94.0000 9.6140 185
1011 1 44.2467 0.9505 G 1.2502 139.2467 135.0000 21.1575 77 9.90148735046387 111.378089392994 95.1099 95.0000 10.9187 188
1012 1 39.1667 0.8414 G 1.2168 135.1667 135.0000 14.7480 66 9.16699600219727 111.080970081737 96.1484 96.0000 10.0540 188
1013 1 31.8116 0.6834 G 1.1404 125.8116 124.0000 17.1450 69 9.37302112579346 110.326390597048 94.9503 94.0000 10.8843 187
1014 1 24.5507 0.5274 G 1.0914 117.5507 114.0000 13.2933 69 9.37302112579346 107.707527982919 93.6538 93.0000 9.8050 188
1015 1 8423.9414 180.9626 G 78.6894 8516.9414 6121.0000 8164.7236 174 14.8843431472778 108.234979113769 93.2250 93.0000 10.1567 124
1016 1 80.6914 1.7334 G 1.6018 173.6914 175.0000 29.6117 81 10.1554126739502 108.436162278028 92.8901 93.0000 10.2908 188
1017 1 36.7403 0.7893 G 1.2187 128.7403 128.0000 13.1242 77 9.90148735046387 105.639826590325 92.9835 92.0000 9.0932 188
1018 1 20.9000 0.4490 G 1.0428 114.9000 117.0000 15.0947 50 7.97884559631348 110.180549350909 94.3187 94.0000 10.7870 188
1019 1 20.0204 0.4301 G 1.0259 116.0204 116.0000 15.1516 49 7.89865398406982 113.094798393141 95.9396 96.0000 11.3965 188
1020 1 23.7069 0.5093 G 1.0822 117.7069 118.0000 13.1267 58 8.59348011016846 108.767341057814 94.1966 94.0000 9.8449 184

Total number of rows: 54359

Table truncated, full table size 6563 Kbytes.




Supplementary file Size Download File type/resource
GSM128537.TXT.gz 2.5 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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