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Sample GSM128539 Query DataSets for GSM128539
Status Public on Mar 23, 2015
Title 2773_d_1
Sample type RNA
 
Source name biopsy, during treatment, chemoradiotherapy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Mar 23, 2015
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE6213 Cervical cancer samples in NIRS

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 5529.4512 116.5482 G 56.1084 5617.4512 4227.0000 5111.1826 166 14.5381488800049 100.117756471415 86.7667 88.0000 8.0785 124
1002 1 209.8353 4.4228 G 2.9258 295.8353 315.0000 82.1820 85 10.4031419754028 101.113438636135 86.7692 86.0000 10.0756 188
1003 1 31.6250 0.6666 G 1.1970 117.6250 116.0000 17.7707 64 9.02703380584717 98.2659297842434 85.9890 86.0000 8.1773 188
1004 1 30.1667 0.6358 G 1.1371 117.1667 116.0000 12.9347 60 8.74038791656494 103.042099990334 86.5778 87.0000 10.6947 186
1005 1 24.9500 0.5259 G 1.1190 110.9500 110.0000 13.2053 60 8.74038791656494 99.1519476624801 86.0440 86.0000 8.7680 188
1006 1 28.8413 0.6079 G 1.1424 112.8413 113.0000 10.5141 63 8.95623207092285 98.7716102669839 85.0000 84.0000 9.8477 188
1007 1 28.5286 0.6013 G 1.1367 114.5286 114.0000 13.6609 70 9.44069766998291 100.756785600122 85.6264 86.0000 9.8379 188
1008 1 5935.4092 125.1048 G 59.9424 6022.4092 4646.0000 5196.5610 156 14.093451499939 100.469966276209 86.4000 87.0000 8.9800 124
1009 1 215.4881 4.5420 G 2.9903 299.4881 313.0000 79.3552 84 10.3417663574219 100.15152782123 85.0226 84.0000 10.7677 183
1010 1 272.7375 5.7487 G 3.6393 356.7375 387.0000 126.8512 80 10.0925302505493 98.0226118220893 84.4890 84.0000 9.3484 188
1011 1 53.8718 1.1355 G 1.4139 138.8718 142.0000 19.1715 78 9.96557521820068 98.222144539892 84.6667 85.0000 8.8148 186
1012 1 37.7727 0.7962 G 1.2339 122.7727 125.0000 14.8475 66 9.16699600219727 99.4978012067544 85.1703 85.0000 9.6652 188
1013 1 29.0328 0.6119 G 1.1508 114.0328 113.0000 11.7891 61 8.81292343139648 99.0858539167383 85.5084 85.0000 9.3906 185
1014 1 42.4857 0.8955 G 1.2403 127.4857 129.0000 17.3565 70 9.44069766998291 102.785735739473 86.2253 85.0000 11.8572 188
1015 1 6381.5063 134.5075 G 63.7569 6466.5063 6475.0000 5282.5327 162 14.3619222640991 101.424432939962 86.3500 85.0000 10.9496 124
1016 1 68.9114 1.4525 G 1.5641 152.9114 156.0000 21.9569 79 10.0292530059814 97.7623676607652 84.8846 84.0000 9.1749 188
1017 1 31.6250 0.6666 G 1.1381 118.6250 117.0000 13.4510 72 9.57461452484131 104.22732670206 87.5824 87.0000 11.4849 188
1018 1 28.8333 0.6077 G 1.1571 114.8333 111.0000 14.3131 66 9.16699600219727 99.2384279832279 86.4176 86.0000 8.8256 188
1019 1 22.2459 0.4689 G 1.0868 108.2459 107.0000 12.5249 61 8.81292343139648 99.5987944150327 85.3352 86.0000 9.0659 188
1020 1 22.0968 0.4657 G 1.0491 109.0968 108.0000 12.0291 62 8.88486671447754 103.987651062289 86.9835 87.0000 11.3251 188

Total number of rows: 54359

Table truncated, full table size 6555 Kbytes.




Supplementary file Size Download File type/resource
GSM128539.TXT.gz 2.5 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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