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GEO accession:
Sample GSM128539
Query DataSets for GSM128539
Status
Public on Mar 23, 2015
Title
2773_d_1
Sample type
RNA
Source name
biopsy, during treatment, chemoradiotherapy
Organism
Homo sapiens
Characteristics
female, cervical cancer
Extracted molecule
total RNA
Extraction protocol
ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label
Cy5
Label protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
Hybridization protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description
during treatment, chemoradiotherapy
Data processing
global median normalization
Submission date
Aug 15, 2006
Last update date
Mar 23, 2015
Contact name
Shuhei Noda
E-mail(s)
s_noda@nirs.go.jp
Organization name
National institute of radiological sciences
Department
Frontier research center
Street address
Anagawa 4-9-1
City
Chiba
State/province
Chiba
ZIP/Postal code
2658333
Country
Japan
Platform ID
GPL2895
Series (1)
GSE6213
Cervical cancer samples in NIRS
Data table header descriptions
ID_REF
Array
Logical array
Raw_intensity
Raw signal intensity value
VALUE
Median normalized signal intensity value
Quality_flag
CodeLink quality flag
Signal_strength
Signal strength
Spot_mean
Spot median
Spot_median
Spot median
Spot_stdev
Spot standard deviation
Spot_area
Spot area
Spot_diameter
Spot diameter
Spot_noise_level
Spot noise level
Bkgd_mean
Background mean
Bkgd_median
Background median
Bkgd_stdev
Background standard deviation
Bkgd_area
Background area
Data table
ID_REF
Array
Raw_intensity
VALUE
Quality_flag
Signal_strength
Spot_mean
Spot_median
Spot_stdev
Spot_area
Spot_diameter
Spot_noise_level
Bkgd_mean
Bkgd_median
Bkgd_stdev
Bkgd_area
1001
1
5529.4512
116.5482
G
56.1084
5617.4512
4227.0000
5111.1826
166
14.5381488800049
100.117756471415
86.7667
88.0000
8.0785
124
1002
1
209.8353
4.4228
G
2.9258
295.8353
315.0000
82.1820
85
10.4031419754028
101.113438636135
86.7692
86.0000
10.0756
188
1003
1
31.6250
0.6666
G
1.1970
117.6250
116.0000
17.7707
64
9.02703380584717
98.2659297842434
85.9890
86.0000
8.1773
188
1004
1
30.1667
0.6358
G
1.1371
117.1667
116.0000
12.9347
60
8.74038791656494
103.042099990334
86.5778
87.0000
10.6947
186
1005
1
24.9500
0.5259
G
1.1190
110.9500
110.0000
13.2053
60
8.74038791656494
99.1519476624801
86.0440
86.0000
8.7680
188
1006
1
28.8413
0.6079
G
1.1424
112.8413
113.0000
10.5141
63
8.95623207092285
98.7716102669839
85.0000
84.0000
9.8477
188
1007
1
28.5286
0.6013
G
1.1367
114.5286
114.0000
13.6609
70
9.44069766998291
100.756785600122
85.6264
86.0000
9.8379
188
1008
1
5935.4092
125.1048
G
59.9424
6022.4092
4646.0000
5196.5610
156
14.093451499939
100.469966276209
86.4000
87.0000
8.9800
124
1009
1
215.4881
4.5420
G
2.9903
299.4881
313.0000
79.3552
84
10.3417663574219
100.15152782123
85.0226
84.0000
10.7677
183
1010
1
272.7375
5.7487
G
3.6393
356.7375
387.0000
126.8512
80
10.0925302505493
98.0226118220893
84.4890
84.0000
9.3484
188
1011
1
53.8718
1.1355
G
1.4139
138.8718
142.0000
19.1715
78
9.96557521820068
98.222144539892
84.6667
85.0000
8.8148
186
1012
1
37.7727
0.7962
G
1.2339
122.7727
125.0000
14.8475
66
9.16699600219727
99.4978012067544
85.1703
85.0000
9.6652
188
1013
1
29.0328
0.6119
G
1.1508
114.0328
113.0000
11.7891
61
8.81292343139648
99.0858539167383
85.5084
85.0000
9.3906
185
1014
1
42.4857
0.8955
G
1.2403
127.4857
129.0000
17.3565
70
9.44069766998291
102.785735739473
86.2253
85.0000
11.8572
188
1015
1
6381.5063
134.5075
G
63.7569
6466.5063
6475.0000
5282.5327
162
14.3619222640991
101.424432939962
86.3500
85.0000
10.9496
124
1016
1
68.9114
1.4525
G
1.5641
152.9114
156.0000
21.9569
79
10.0292530059814
97.7623676607652
84.8846
84.0000
9.1749
188
1017
1
31.6250
0.6666
G
1.1381
118.6250
117.0000
13.4510
72
9.57461452484131
104.22732670206
87.5824
87.0000
11.4849
188
1018
1
28.8333
0.6077
G
1.1571
114.8333
111.0000
14.3131
66
9.16699600219727
99.2384279832279
86.4176
86.0000
8.8256
188
1019
1
22.2459
0.4689
G
1.0868
108.2459
107.0000
12.5249
61
8.81292343139648
99.5987944150327
85.3352
86.0000
9.0659
188
1020
1
22.0968
0.4657
G
1.0491
109.0968
108.0000
12.0291
62
8.88486671447754
103.987651062289
86.9835
87.0000
11.3251
188
Total number of rows:
54359
Table truncated, full table size
6555 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM128539.TXT.gz
2.5 Mb
(ftp)
(http)
TXT
Processed data included within Sample table
Processed data provided as supplementary file
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