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Sample GSM128540 Query DataSets for GSM128540
Status Public on Mar 23, 2015
Title 2773_d_2
Sample type RNA
 
Source name biopsy, during treatment, chemoradiotherapy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Mar 23, 2015
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE6213 Cervical cancer samples in NIRS

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 5666.2388 113.3570 G 55.8015 5753.2388 5099.0000 4910.4268 161 14.3175268173218 103.10193930579 87.5333 87.0000 10.7346 124
1002 1 250.4824 5.0111 G 3.3537 336.4824 357.0000 87.4832 85 10.4031419754028 100.332211816231 86.2912 86.0000 9.5548 188
1003 1 22.1500 0.4431 G 1.0690 107.1500 104.0000 13.3464 60 8.74038791656494 100.231170595951 85.5330 85.0000 10.1541 188
1004 1 29.2985 0.5861 G 1.1450 115.2985 116.0000 15.6033 67 9.23618125915527 100.695438339173 86.0508 86.0000 9.7970 183
1005 1 20.1579 0.4033 G 1.0642 109.1579 108.0000 12.0784 57 8.51907634735107 102.573850581698 87.8297 89.0000 9.0492 188
1006 1 27.2727 0.5456 G 1.1396 112.2727 110.0000 14.1363 66 9.16699600219727 98.5198262106289 85.5801 85.0000 9.0132 187
1007 1 27.9859 0.5599 G 1.1376 113.9859 114.0000 14.1973 71 9.50789165496826 100.200390476122 85.8791 86.0000 9.4669 188
1008 1 5641.3208 112.8585 G 56.7416 5727.3208 5185.0000 5063.1934 164 14.4503040313721 100.936865666645 86.2000 86.0000 9.9579 124
1009 1 261.5955 5.2334 G 3.4960 346.5955 368.0000 107.7281 89 10.6451082229614 99.1409112856367 84.9148 85.0000 9.4273 182
1010 1 331.2561 6.6270 G 4.1904 416.2561 459.0000 149.1885 82 10.2179079055786 99.3345835229859 85.3846 85.0000 9.5564 188
1011 1 59.3333 1.1870 G 1.4850 141.3333 139.0000 19.4083 78 9.96557521820068 95.1727580106027 83.7033 82.0000 8.7818 188
1012 1 33.0794 0.6618 G 1.1898 117.0794 118.0000 14.0151 63 8.95623207092285 98.3987942068387 84.2308 84.0000 9.5992 188
1013 1 23.9231 0.4786 G 1.1059 106.9231 107.0000 13.5059 65 9.09728336334229 96.6808092320936 83.3187 83.0000 9.1205 188
1014 1 44.0267 0.8808 G 1.3100 129.0267 128.0000 17.6537 75 9.77204990386963 98.4907344813425 84.7747 85.0000 8.9938 188
1015 1 6036.5122 120.7646 G 61.8446 6121.5122 5217.0000 5212.5527 166 14.5381488800049 98.9821302431824 85.3333 85.0000 9.3214 124
1016 1 80.7037 1.6145 G 1.6599 164.7037 164.0000 25.9988 81 10.1554126739502 99.2230986931837 85.0934 84.0000 10.1487 188
1017 1 35.8784 0.7178 G 1.2253 118.8784 119.0000 13.9400 74 9.70668506622314 97.0169118800911 84.6648 83.0000 9.3446 188
1018 1 41.2838 0.8259 G 1.2683 127.2838 113.0000 69.2255 74 9.70668506622314 100.358010265387 86.0417 86.0000 9.5720 124
1019 1 22.5238 0.4506 G 1.0600 107.5238 108.0000 12.1719 63 8.95623207092285 101.434072667936 85.7473 85.0000 10.9560 188
1020 1 20.5614 0.4113 G 1.0670 106.5614 108.0000 14.3001 57 8.51907634735107 99.8686732419647 86.6188 86.0000 9.2458 187

Total number of rows: 54359

Table truncated, full table size 6557 Kbytes.




Supplementary file Size Download File type/resource
GSM128540.TXT.gz 2.5 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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