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Sample GSM128542 Query DataSets for GSM128542
Status Public on Apr 30, 2007
Title 2774_p_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (2)
GSE3578 Activated Cell Death Pathway
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 5865.2842 118.4906 G 44.0837 5984.2842 5499.0000 5137.6094 164 14.4503040313721 135.748339515837 117.7833 119.0000 11.1656 124 118.4906
1002 1 202.4762 4.0904 G 2.4244 312.4762 330.0000 87.6764 84 10.3417663574219 128.886045777739 111.1868 110.0000 12.5907 188 4.0904
1003 1 29.6444 0.5989 G 1.1039 133.6444 131.0000 16.4251 45 7.56939744949341 121.063206936738 105.7849 104.0000 11.3755 178 0.5989
1004 1 34.6721 0.7004 G 1.1703 134.6721 133.0000 17.2567 61 8.81292343139648 115.073392674066 100.5593 100.0000 10.0489 183 0.7004
1005 1 22.4138 0.4528 G 1.0544 125.4138 123.0000 16.5113 58 8.59348011016846 118.941751680203 102.5495 103.0000 10.6278 188 0.4528
1006 1 23.2586 0.4699 G 1.0788 124.2586 128.0000 16.4982 58 8.59348011016846 115.187099925408 102.3536 101.0000 9.4581 187 0.4699
1007 1 31.0000 0.6263 G 1.1166 133.0000 130.0000 16.0949 67 9.23618125915527 119.108723708744 102.6337 102.0000 11.4058 178 0.6263
1008 1 6034.9561 121.9183 G 52.3114 6134.9561 5765.0000 5191.5215 162 14.3619222640991 117.277582940079 101.4000 100.0000 11.5184 124 121.9183
1009 1 130.8861 2.6442 G 1.9795 230.8861 235.0000 40.2404 79 10.0292530059814 116.638588195817 99.3164 100.0000 11.0924 183 2.6442
1010 1 137.1842 2.7714 G 2.1050 232.1842 241.0000 53.3814 76 9.83698177337646 110.303320014493 95.5000 95.0000 10.2022 188 2.7714
1011 1 46.0000 0.9293 G 1.2879 138.0000 136.0000 15.2822 75 9.77204990386963 107.151297761984 93.1500 92.0000 10.1009 186 0.9293
1012 1 29.7969 0.6020 G 1.1482 123.7969 122.0000 12.3973 64 9.02703380584717 107.821234632504 93.0220 94.0000 9.2142 188 0.6020
1013 1 21.7414 0.4392 G 1.0625 113.7414 113.0000 15.2265 58 8.59348011016846 107.046217605884 92.3129 92.0000 10.0308 185 0.4392
1014 1 69.1923 1.3978 G 1.5317 160.1923 158.0000 27.4736 78 9.96557521820068 104.581660583018 90.6593 91.0000 9.0544 188 1.3978
1015 1 5836.9541 117.9183 G 56.1814 5927.9541 4523.0000 5315.4536 177 15.0121088027954 105.514581116692 91.4977 91.0000 9.6764 225 117.9183
1016 1 35.5714 0.7186 G 1.1955 130.5714 131.0000 13.1829 70 9.44069766998291 109.21700112267 94.3187 95.0000 9.4780 188 0.7186
1017 1 29.8971 0.6040 G 1.1345 123.8971 124.0000 11.6115 68 9.30485343933105 109.208360000836 93.3132 94.0000 10.1389 188 0.6040
1018 1 26.1324 0.5279 G 1.1146 118.1324 117.0000 13.0428 68 9.30485343933105 105.981634923847 92.2143 92.0000 9.3211 188 0.5279
1019 1 19.7241 0.3985 G 1.0552 111.7241 111.0000 15.5106 58 8.59348011016846 105.883628443709 91.9176 92.0000 9.2558 188 0.3985
1020 1 26.1053 0.5274 G 1.1025 118.1053 116.0000 12.6930 57 8.51907634735107 107.128630534001 92.5055 92.0000 10.0858 188 0.5274

Total number of rows: 54359

Table truncated, full table size 6951 Kbytes.




Supplementary file Size Download File type/resource
GSM128542.TXT.gz 2.5 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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