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Sample GSM128546 Query DataSets for GSM128546
Status Public on Sep 28, 2010
Title 2775_p_2
Sample type RNA
 
Source name biopsy, prior to treatment, chemoradiotherapy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Sep 28, 2010
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 5575.3643 122.3458 G 54.7754 5663.3643 4530.0000 4969.5083 153 13.9572792053223 103.392443802155 88.3750 88.0000 10.2616 124
1002 1 193.4118 4.2442 G 2.7779 280.4118 296.0000 75.1877 85 10.4031419754028 100.94242886011 87.5879 87.0000 9.2950 188
1003 1 28.0690 0.6159 G 1.1263 115.0690 116.0000 12.2838 58 8.59348011016846 102.169369820977 87.5333 87.0000 10.1129 186
1004 1 31.9344 0.7008 G 1.1863 117.9344 117.0000 10.5035 61 8.81292343139648 99.414016763521 87.9830 86.0000 8.9427 183
1005 1 23.9016 0.5245 G 1.0913 110.9016 111.0000 15.8866 61 8.81292343139648 101.618993221872 87.3132 87.0000 9.7460 188
1006 1 29.3438 0.6439 G 1.1440 116.3438 115.0000 13.7559 64 9.02703380584717 101.694647882158 87.5291 87.0000 9.7964 178
1007 1 30.6154 0.6718 G 1.1601 116.6154 119.0000 13.2301 65 9.09728336334229 100.52529191916 86.2747 86.0000 9.6835 188
1008 1 5687.2661 124.8014 G 55.0219 5777.2661 5220.0000 5222.2710 156 14.093451499939 104.999480228616 89.5833 90.0000 9.9997 124
1009 1 294.3882 6.4601 G 3.7523 381.3882 412.0000 124.3111 85 10.4031419754028 101.642127768322 87.9780 87.0000 9.7614 188
1010 1 133.7533 2.9351 G 2.2112 220.7533 234.0000 55.7548 77 9.90148735046387 99.832579122096 87.1593 87.0000 8.5551 188
1011 1 30.2879 0.6646 G 1.1511 116.2879 115.0000 14.2752 66 9.16699600219727 101.027644995064 86.2857 86.0000 10.0184 188
1012 1 35.1452 0.7712 G 1.2005 122.1452 122.0000 13.2347 62 8.88486671447754 101.744242039445 88.2143 87.0000 9.8295 188
1013 1 23.1905 0.5089 G 1.0502 112.1905 112.0000 13.6252 63 8.95623207092285 106.831714851442 89.4176 89.0000 11.8878 188
1014 1 41.1857 0.9038 G 1.2782 128.1857 124.0000 24.6902 70 9.44069766998291 100.283233950039 87.2527 87.0000 8.8555 188
1015 1 5817.3818 127.6567 G 59.0233 5902.3818 3572.0000 5557.0166 167 14.5818719863892 100.000916717412 85.4333 85.0000 10.0006 124
1016 1 31.4627 0.6904 G 1.1667 117.4627 116.0000 12.2235 67 9.23618125915527 100.67743871525 86.4144 86.0000 9.7850 187
1017 1 33.9265 0.7445 G 1.1875 119.9265 121.0000 14.4348 68 9.30485343933105 100.991166024707 86.1154 86.0000 9.9941 188
1018 1 26.1846 0.5746 G 1.1298 112.1846 110.0000 16.7027 65 9.09728336334229 99.2926151842437 85.6648 86.0000 8.8617 188
1019 1 21.1148 0.4633 G 1.0611 108.1148 110.0000 12.9894 61 8.81292343139648 101.886374168404 87.6099 87.0000 9.9242 188
1020 1 28.9118 0.6344 G 1.1500 113.9118 112.0000 13.4030 68 9.30485343933105 99.0527259524857 85.6758 85.0000 9.3685 188

Total number of rows: 54359

Table truncated, full table size 6556 Kbytes.




Supplementary file Size Download File type/resource
GSM128546.TXT.gz 2.5 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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