NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM128567 Query DataSets for GSM128567
Status Public on Apr 30, 2007
Title 1590_d_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 13885.4502 179.3471 G 147.9119 13962.4502 4441.0000 15327.3604 213 16.4681510925293 94.3970644412705 77.3421 77.0000 11.5980 236 179.3471
1002 1 853.9528 11.0298 G 9.9809 932.9528 1070.0000 466.4913 108 11.7264604568481 93.4738098134168 79.3372 79.0000 9.6492 178 11.0298
1003 1 2.3200 0.0300 L 0.8364 82.3200 81.0000 11.4376 50 7.97884559631348 98.4217264595162 81.8000 80.0000 12.2812 124 0.0300
1004 1 15.8444 0.2046 G 1.0034 95.8444 94.0000 13.0468 45 7.56939744949341 95.5182165023337 80.2667 80.0000 10.3455 186 0.2046
1005 1 0.6667 0.0086 L 0.8297 75.6667 73.0000 11.2704 30 6.18038702011108 91.19657108769 76.5611 75.0000 10.7977 186 0.0086
1006 1 14.0333 0.1813 L 0.9826 89.0333 88.0000 15.3922 90 10.7047443389893 90.6085797244992 76.0093 75.0000 10.4057 223 0.1813
1007 1 12.4310 0.1606 L 0.9760 89.4310 91.0000 14.0481 58 8.59348011016846 91.6299145377962 77.4167 77.0000 9.7533 124 0.1606
1008 1 13733.7266 177.3874 G 146.7218 13812.7266 4161.0000 15522.2344 220 16.7365684509277 94.1423106178549 79.0708 79.0000 10.0949 234 177.3874
1009 1 358.3474 4.6285 G 4.7951 433.3474 459.0000 153.9903 95 10.9980792999268 90.3731988786426 76.1978 75.0000 10.2488 188 4.6285
1010 1 2615.1514 33.7778 G 29.1645 2692.1514 2999.0000 1911.2202 121 12.4121704101563 92.3092947422531 76.3167 77.0000 10.2062 124 33.7778
1011 1 83.6173 1.0800 G 1.7599 159.6173 160.0000 27.9243 81 10.1554126739502 90.6990021033343 76.4722 76.0000 9.7993 186 1.0800
1012 1 73.5063 0.9494 G 1.6751 148.5063 151.0000 29.0102 79 10.0292530059814 88.6535906279051 75.1209 75.0000 9.1024 188 0.9494
1013 1 50.1918 0.6483 G 1.3957 123.1918 125.0000 16.1361 73 9.64087581634521 88.2678615340712 73.7308 73.0000 10.1786 188 0.6483
1014 1 17.0909 0.2207 G 1.0328 93.0909 96.0000 12.0620 44 7.48482084274292 90.1369071219641 76.0330 76.0000 9.4246 188 0.2207
1015 1 16694.3652 215.6276 G 171.0310 16776.3652 7257.0000 17445.2207 229 17.075475692749 98.0896045915807 82.6384 82.0000 10.7264 183 215.6276
1016 1 117.2525 1.5145 G 2.0947 197.2525 201.0000 34.6668 99 11.2272310256958 94.1681768602505 79.4036 80.0000 9.4455 172 1.5145
1017 1 15.0417 0.1943 G 1.0017 93.0417 93.0000 17.4618 48 7.81764030456543 92.8882678539061 78.3242 78.0000 9.9255 188 0.1943
1018 1 10.9302 0.1412 L 0.9502 90.9302 93.0000 13.1032 43 7.3992772102356 95.6960741713592 80.4545 80.0000 10.4641 171 0.1412
1019 1 1.3902 0.0180 L 0.8384 83.3902 84.0000 10.6505 82 10.2179079055786 99.4609368090799 83.3636 82.0000 11.6406 217 0.0180
1020 1 11.5294 0.1489 L 0.8724 106.5294 105.0000 14.6433 34 6.57952451705933 122.111361362917 97.1164 95.0000 18.0742 152 0.1489

Total number of rows: 54359

Table truncated, full table size 6978 Kbytes.




Supplementary file Size Download File type/resource
GSM128567.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap