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Sample GSM128581 Query DataSets for GSM128581
Status Public on Mar 23, 2015
Title 1992_p_1
Sample type RNA
 
Source name biopsy, prior to treatment, radiotherapy alone
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Mar 23, 2015
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE6213 Cervical cancer samples in NIRS

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 11403.4971 117.7510 G 124.3030 11482.4971 5326.0000 11738.5137 183 15.2644300460815 92.3750645229914 79.0250 79.0000 8.9167 124
1002 1 899.2252 9.2853 G 10.7521 976.2252 1039.0000 558.0599 113 11.9948348999023 90.7936461870745 77.8190 77.0000 9.1958 120
1003 1 1.9882 0.0205 L 0.8685 79.9882 79.0000 10.7763 85 10.4031419754028 92.0992045446903 78.6230 78.0000 9.3995 197
1004 1 14.0143 0.1447 L 0.9977 89.0143 90.0000 10.8858 70 9.44069766998291 89.2189668437132 75.9072 75.0000 9.4793 99
1005 1 12.5789 0.1299 L 0.9884 89.5789 91.0000 12.4618 38 6.95579624176025 90.6300867075866 77.4890 77.0000 9.0867 188
1006 1 20.9608 0.2164 G 1.0769 97.9608 99.0000 11.0719 51 8.0582389831543 90.9646889628434 77.3277 77.0000 9.3098 183
1007 1 27.3768 0.2827 G 1.1551 105.3768 103.0000 16.2580 69 9.37302112579346 91.2281968295905 77.9116 78.0000 8.8188 187
1008 1 10842.6582 111.9599 G 122.3569 10918.6582 4241.0000 11738.8945 198 15.8777027130127 89.2361215865149 77.2714 76.0000 8.8241 218
1009 1 568.0206 5.8653 G 6.9824 646.0206 684.0000 275.6953 97 11.1132459640503 92.5217736681983 78.2833 78.0000 9.6812 186
1010 1 500.7667 5.1709 G 6.3061 578.7667 635.0000 255.8502 90 10.7047443389893 91.7792838887637 78.4176 78.0000 9.1862 188
1011 1 258.8222 2.6726 G 3.6871 335.8222 353.0000 110.0650 90 10.7047443389893 91.0803005091362 76.7289 77.0000 9.3869 172
1012 1 46.0417 0.4754 G 1.3659 123.0417 119.0000 21.2357 72 9.57461452484131 90.0785008622556 76.6115 77.0000 8.7190 163
1013 1 22.7313 0.2347 G 1.1017 99.7313 99.0000 11.5456 67 9.23618125915527 90.523248023351 77.5269 77.0000 9.0155 173
1014 1 108.9375 1.1249 G 2.0613 185.9375 184.0000 38.8105 80 10.0925302505493 90.2021490890013 76.7450 77.0000 8.8014 155
1015 1 10762.8965 111.1363 G 120.2225 10839.8965 2908.0000 11997.9326 196 15.7973079681396 90.1652635950381 77.3440 77.0000 8.7768 226
1016 1 34.6716 0.3580 G 1.2452 112.6716 114.0000 14.9959 67 9.23618125915527 90.4849341475678 77.1761 78.0000 8.3233 165
1017 1 76.9630 0.7947 G 1.7223 152.9630 156.0000 26.5987 81 10.1554126739502 88.8147912709795 76.5110 76.0000 8.5432 188
1018 1 6.2667 0.0647 L 0.9311 83.2667 83.0000 10.8748 90 10.7047443389893 89.4300293964007 77.2105 77.0000 8.2867 177
1019 1 11.7895 0.1217 L 0.9659 87.7895 89.0000 11.4803 38 6.95579624176025 90.8902959442433 76.6763 76.0000 9.9269 179
1020 1 48.5714 0.5015 G 1.2062 123.5714 123.0000 16.7610 70 9.44069766998291 102.446980721817 76.8779 75.0000 18.2980 178

Total number of rows: 54359

Table truncated, full table size 6576 Kbytes.




Supplementary file Size Download File type/resource
GSM128581.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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