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Sample GSM128584 Query DataSets for GSM128584
Status Public on Mar 23, 2015
Title 1992_d_2
Sample type RNA
 
Source name biopsy, during treatment, radiotherapy alone
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Mar 23, 2015
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE6213 Cervical cancer samples in NIRS

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 12704.3643 124.4674 G 120.7904 12787.3643 11240.0000 11737.0723 194 15.7165031433105 105.864099549805 85.8372 83.0000 15.2427 223
1002 1 1005.7084 9.8531 G 10.8764 1090.7084 1249.0000 579.8449 122 12.4633550643921 100.282447209894 85.1560 85.0000 10.1883 113
1003 1 2.8000 0.0274 L 0.8641 86.8000 87.0000 13.7341 30 6.18038702011108 100.447975186095 85.1209 84.0000 10.9653 188
1004 1 0.7805 0.0076 L 0.8318 86.7805 88.0000 10.8460 82 10.2179079055786 104.334666669533 86.3702 86.0000 12.2231 187
1005 1 108.1111 1.0592 G 1.8539 194.1111 106.0000 259.4790 45 7.56939744949341 104.703231989333 86.3313 86.0000 12.4688 166
1006 1 22.1667 0.2172 G 1.0008 105.1667 103.0000 11.9733 36 6.7702751159668 105.083435256023 85.1348 83.0000 14.7223 184
1007 1 9.9310 0.0973 CL 0.7472 96.9310 94.0000 14.9457 29 6.07650756835938 129.732593692245 90.6369 87.0000 28.4884 174
1008 1 13526.8594 132.5256 G 129.7166 13613.8594 11666.0000 12267.3984 194 15.7165031433105 104.950789114876 87.5955 87.0000 11.9672 228
1009 1 496.4821 4.8641 G 5.7525 582.4821 631.0000 244.7367 114 12.0477924346924 101.256666234525 86.5463 86.0000 10.1711 112
1010 1 631.6122 6.1880 G 6.7073 714.6122 739.0000 304.0775 98 11.1703834533691 106.542184619882 85.4780 83.0000 15.6948 188
1011 1 202.6316 1.9852 G 2.8743 286.6316 281.0000 86.5501 95 10.9980792999268 99.7208106033755 84.6538 84.0000 10.4805 188
1012 1 42.3247 0.4147 G 1.3067 122.3247 118.0000 19.7316 77 9.90148735046387 93.6151017785554 80.3595 80.0000 9.0767 159
1013 1 20.5246 0.2011 G 1.0697 102.5246 102.0000 16.5248 61 8.81292343139648 95.8400265487248 82.1989 82.0000 9.2267 187
1014 1 177.4674 1.7387 G 2.7003 258.4674 257.0000 65.8223 92 10.8230323791504 95.7166374876027 81.3407 81.0000 9.8111 188
1015 1 12079.7998 118.3484 G 127.9876 12159.7998 8368.0000 11444.7539 204 16.1164779663086 95.0076664982076 80.7689 80.0000 10.0051 220
1016 1 21.3143 0.2088 G 1.0779 100.3143 98.0000 11.3786 70 9.44069766998291 93.0659104580218 79.9274 79.0000 9.3773 185
1017 1 75.4831 0.7395 G 1.6379 157.4831 160.0000 24.9319 89 10.6451082229614 96.1521660223232 81.2092 82.0000 9.4348 159
1018 1 7.1800 0.0703 L 0.9461 86.1800 85.0000 10.8714 102 11.396071434021 91.0926413354285 79.1858 79.0000 8.0618 234
1019 1 8.6667 0.0849 L 0.9354 89.6667 89.0000 13.8131 93 10.8816947937012 95.8610772444824 80.7394 81.0000 9.9074 171
1020 1 43.2500 0.4237 G 1.2978 126.2500 127.0000 19.7652 76 9.83698177337646 97.2833048895008 82.5479 83.0000 9.5222 152

Total number of rows: 54359

Table truncated, full table size 6587 Kbytes.




Supplementary file Size Download File type/resource
GSM128584.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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