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Sample GSM128592 Query DataSets for GSM128592
Status Public on Mar 23, 2015
Title 2513_d_2
Sample type RNA
 
Source name biopsy, during treatment, radiotherapy alone
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Mar 23, 2015
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE6213 Cervical cancer samples in NIRS

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 5648.0967 103.1354 G 52.0276 5741.0967 4315.0000 5288.6377 147 13.6808700561523 110.347081289827 94.1250 93.0000 11.5647 124
1002 1 201.4643 3.6788 G 2.6547 294.4643 307.0000 86.0930 84 10.3417663574219 110.922039961554 95.4835 93.0000 11.9480 188
1003 1 23.1724 0.4231 G 1.0917 118.1724 118.0000 12.8280 58 8.59348011016846 108.246122753881 94.9615 95.0000 8.8307 188
1004 1 33.4746 0.6113 G 1.1675 127.4746 123.0000 24.5456 59 8.66724491119385 109.183079033641 94.0722 94.0000 10.1221 186
1005 1 20.4000 0.3725 L 0.9502 115.4000 119.0000 12.5913 40 7.13649654388428 121.453600469381 98.7967 95.0000 17.6357 188
1006 1 29.3710 0.5363 G 1.1359 124.3710 123.0000 13.9043 62 8.88486671447754 109.490992357664 94.9176 95.0000 9.6607 188
1007 1 27.4286 0.5009 G 1.1359 122.4286 119.0000 17.6931 70 9.44069766998291 107.783017850119 94.8462 95.0000 8.5220 188
1008 1 6865.2876 125.3616 G 62.0091 6961.2876 5249.0000 6499.3511 148 13.7273254394531 112.262372340954 95.9583 96.0000 10.8416 124
1009 1 276.2558 5.0445 G 3.4346 370.2558 408.0000 116.6934 86 10.4641580581665 107.800231806884 94.1484 94.0000 9.2002 188
1010 1 167.3333 3.0555 G 2.3617 262.3333 282.0000 73.5256 75 9.77204990386963 111.076374372353 95.1703 95.0000 10.7176 188
1011 1 36.0000 0.6574 G 1.1587 132.0000 130.0000 17.5149 70 9.44069766998291 113.921090781928 96.0385 96.0000 11.9474 188
1012 1 34.1786 0.6241 G 1.1325 130.1786 126.0000 24.3407 56 8.444016456604 114.949668619588 97.7473 96.0000 12.6331 188
1013 1 26.9254 0.4917 G 1.0895 122.9254 122.0000 13.5793 67 9.23618125915527 112.82280542531 96.8736 96.0000 11.2152 188
1014 1 60.3378 1.1018 G 1.3566 159.3378 158.0000 21.3379 74 9.70668506622314 117.456277367151 99.3956 99.0000 12.3042 188
1015 1 6518.0425 119.0208 G 60.9862 6612.0425 3961.0000 6423.7983 167 14.5818719863892 108.418689669956 95.7250 94.0000 9.6125 124
1016 1 26.8750 0.4907 G 1.0983 125.8750 127.0000 13.4497 56 8.444016456604 114.604091908503 98.0549 99.0000 10.4027 188
1017 1 28.1324 0.5137 G 1.0963 128.1324 121.0000 31.3528 68 9.30485343933105 116.872654994465 99.7033 100.0000 11.2484 188
1018 1 19.5769 0.3575 G 1.0424 118.5769 119.0000 10.8137 52 8.1368579864502 113.749441056138 97.4505 99.0000 9.8330 188
1019 1 20.2459 0.3697 G 1.0591 118.2459 118.0000 9.1071 61 8.81292343139648 111.647316777558 97.5000 98.0000 9.0982 188
1020 1 38.2453 0.6984 G 1.1586 137.2453 125.0000 45.8854 53 8.21472454071045 118.456773141549 101.2253 99.0000 12.9712 188

Total number of rows: 54359

Table truncated, full table size 6579 Kbytes.




Supplementary file Size Download File type/resource
GSM128592.TXT.gz 2.5 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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