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Sample GSM128593 Query DataSets for GSM128593
Status Public on Apr 30, 2007
Title 2518_p_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (2)
GSE3578 Activated Cell Death Pathway
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 6418.7627 152.2355 G 64.9639 6504.7627 5318.0000 5897.2051 158 14.1835060119629 100.128874054325 85.3333 86.0000 9.4192 124 152.2355
1002 1 191.8391 4.5499 G 2.8048 276.8391 300.0000 74.0764 87 10.5248203277588 98.7033473532114 85.5165 85.0000 9.1356 188 4.5499
1003 1 20.0755 0.4761 G 1.0540 104.0755 103.0000 11.2415 53 8.21472454071045 98.7450481759813 85.4286 84.0000 9.8300 188 0.4761
1004 1 26.0161 0.6170 G 1.1129 109.0161 110.0000 10.0105 62 8.88486671447754 97.955964173037 83.7765 83.0000 9.9706 185 0.6170
1005 1 21.9000 0.5194 G 1.0664 106.9000 107.0000 12.1047 60 8.74038791656494 100.244177375215 85.1333 85.0000 10.1628 186 0.5194
1006 1 26.3594 0.6252 G 1.1392 108.3594 108.0000 11.1641 64 9.02703380584717 95.1155810275778 82.3022 82.0000 8.7437 188 0.6252
1007 1 25.1212 0.5958 G 1.1218 109.1212 107.0000 13.8635 66 9.16699600219727 97.2775058193807 84.0714 84.0000 8.8517 188 0.5958
1008 1 6602.0596 156.5828 G 66.2901 6688.0596 5521.0000 6052.4155 153 13.9572792053223 100.890763337579 85.8667 86.0000 9.9272 124 156.5828
1009 1 236.4556 5.6081 G 3.2781 321.4556 340.0000 92.5432 90 10.7047443389893 98.0606507565308 85.9286 85.0000 8.7071 188 5.6081
1010 1 131.8375 3.1268 G 2.1908 217.8375 239.0000 56.8066 80 10.0925302505493 99.4346188445439 84.7088 86.0000 8.9564 188 3.1268
1011 1 37.5541 0.8907 G 1.2246 122.5541 121.0000 16.4704 74 9.70668506622314 100.075755415005 84.7692 85.0000 10.0505 188 0.8907
1012 1 31.5263 0.7477 G 1.1730 114.5263 114.0000 11.3402 57 8.51907634735107 97.6321484072826 84.1429 83.0000 9.7548 188 0.7477
1013 1 24.4154 0.5791 G 1.1046 108.4154 109.0000 11.8723 65 9.09728336334229 98.1519780050778 83.7569 84.0000 9.4347 187 0.5791
1014 1 31.2609 0.7414 G 1.1638 115.2609 114.0000 12.4687 69 9.37302112579346 99.0376032791617 84.5275 84.0000 10.0251 188 0.7414
1015 1 6703.3521 158.9852 G 68.1567 6789.3521 5290.0000 6119.6577 161 14.3175268173218 99.6138163589632 84.9417 86.0000 9.0759 124 158.9852
1016 1 31.0448 0.7363 G 1.1846 114.0448 114.0000 12.8568 67 9.23618125915527 96.2732031109664 83.7637 83.0000 8.8488 188 0.7363
1017 1 28.6203 0.6788 G 1.1712 110.6203 110.0000 14.6160 79 10.0292530059814 94.4538888498703 82.7308 82.0000 8.3026 188 0.6788
1018 1 19.2321 0.4561 G 1.0562 103.2321 103.0000 10.1998 56 8.444016456604 97.7406503628251 83.8077 84.0000 9.1604 188 0.4561
1019 1 17.5902 0.4172 G 1.0469 102.5902 103.0000 10.5495 61 8.81292343139648 97.9964296763877 84.7198 85.0000 8.6643 188 0.4172
1020 1 25.2667 0.5993 G 1.1146 111.2667 111.0000 10.1782 60 8.74038791656494 99.8231792106699 86.0805 86.0000 9.2155 180 0.5993

Total number of rows: 54359

Table truncated, full table size 6913 Kbytes.




Supplementary file Size Download File type/resource
GSM128593.TXT.gz 2.5 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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