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Sample GSM128594 Query DataSets for GSM128594
Status Public on Apr 30, 2007
Title 2518_p_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (2)
GSE3578 Activated Cell Death Pathway
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 7664.0327 150.3476 G 75.0662 7753.0327 4480.0000 7534.3013 155 14.04820728302 103.282584071131 90.1083 89.0000 9.5217 124 150.3476
1002 1 258.7033 5.0751 G 3.3619 346.7033 376.0000 96.2222 91 10.7640514373779 103.128184249074 88.3022 88.0000 10.0855 188 5.0751
1003 1 26.4915 0.5197 G 1.1311 115.4915 114.0000 15.7796 59 8.66724491119385 102.101237781583 88.2967 89.0000 8.7342 188 0.5197
1004 1 30.3594 0.5956 G 1.1593 117.3594 117.0000 14.0216 64 9.02703380584717 101.229250396133 88.1538 87.0000 9.4862 188 0.5956
1005 1 26.2833 0.5156 G 1.1033 114.2833 114.0000 11.6977 60 8.74038791656494 103.580158743707 88.6154 88.0000 10.3868 188 0.5156
1006 1 31.9216 0.6262 G 1.0994 121.9216 120.0000 14.0278 51 8.0582389831543 110.900597175763 92.3846 90.0000 13.9337 188 0.6262
1007 1 30.6269 0.6008 G 1.1418 117.6269 114.0000 13.6588 67 9.23618125915527 103.020820898055 88.0674 87.0000 10.6805 184 0.6008
1008 1 8185.8252 160.5837 G 80.8595 8273.8252 5933.0000 8062.2295 162 14.3619222640991 102.323490446449 88.4917 88.0000 9.5490 124 160.5837
1009 1 277.0435 5.4348 G 3.5291 366.0435 387.0000 99.0305 92 10.8230323791504 103.720301058884 88.5111 89.0000 9.8135 186 5.4348
1010 1 167.6104 3.2881 G 2.5266 255.6104 278.0000 66.3955 77 9.90148735046387 101.169174394275 88.5028 88.0000 8.7794 187 3.2881
1011 1 49.8846 0.9786 G 1.3547 138.8846 136.0000 18.2897 78 9.96557521820068 102.522013462471 88.9385 89.0000 9.0147 185 0.9786
1012 1 35.9048 0.7044 G 1.2107 123.9048 123.0000 13.0356 63 8.95623207092285 102.341139073244 88.1429 88.0000 9.5608 188 0.7044
1013 1 27.9180 0.5477 G 1.1475 115.9180 115.0000 10.9354 61 8.81292343139648 101.014770795405 88.3901 88.0000 8.6765 188 0.5477
1014 1 40.2727 0.7900 G 1.2665 126.2727 126.0000 14.1904 77 9.90148735046387 99.7056434442077 86.6648 86.0000 9.1371 188 0.7900
1015 1 7920.4849 155.3784 G 77.5946 8009.4849 4623.0000 7892.6045 169 14.6689291000366 103.222249031854 89.1333 89.0000 9.4815 124 155.3784
1016 1 36.9474 0.7248 G 1.2446 124.9474 124.0000 13.3652 76 9.83698177337646 100.387713507235 88.7637 88.0000 8.2585 188 0.7248
1017 1 36.7533 0.7210 G 1.2362 124.7533 122.0000 15.2436 77 9.90148735046387 100.913472482219 88.5604 88.0000 8.6090 188 0.7210
1018 1 24.3788 0.4782 G 1.0992 111.3788 111.0000 10.1111 66 9.16699600219727 101.327307498681 87.6703 87.0000 9.5515 188 0.4782
1019 1 24.6364 0.4833 G 1.0908 113.6364 113.0000 12.3640 66 9.16699600219727 104.175038820398 89.4500 89.0000 10.1167 186 0.4833
1020 1 36.7286 0.7205 G 1.2206 126.7286 125.0000 13.9078 70 9.44069766998291 103.822826706159 89.6484 90.0000 9.2152 188 0.7205

Total number of rows: 54359

Table truncated, full table size 6945 Kbytes.




Supplementary file Size Download File type/resource
GSM128594.TXT.gz 2.5 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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