GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1285944 Query DataSets for GSM1285944
Status Public on Dec 09, 2016
Title alveolar macrophage_untreated_2
Sample type RNA
Source name alveolar macrophage_untreated
Organism Mus musculus
Characteristics strain: C57BL6
treatment: none
cell type: alveolar macrophage
Treatment protocol Mice were treated with broad-spectrum antibiotics (ampicillin1 g ml−1, Mediatech; neomycin sulfate 1 g ml−1, Calbiochem; metronidazole 1 g ml−1, Fluka; and vancomycin 0.5 g ml−1, Sigma) in drinking water for 3 weeks.
Growth protocol Specific pathogen-free C57Bl/6 mice were purchased from Harlan Sprague-Dawley (Horst, the Netherlands) and housed in a controlled environemt on 12h/12h light/dark cycles.
Extracted molecule total RNA
Extraction protocol Rneasy kit procedures including DNAse digestion.
Label biotin
Label protocol standard biotin Ambion labeling - Illumina
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description 9340020021_C
Data processing NEQC normalized implemented in beadarray package.
Submission date Dec 10, 2013
Last update date Dec 09, 2016
Contact name Brendon Paul Scicluna
Organization name Academic Medical Center
Street address Meibergdreef 9
City Amsterdam
ZIP/Postal code 1105AZ
Country Netherlands
Platform ID GPL6885
Series (1)
GSE53174 Genome-wide analysis of whole-lung and alveolar macrophages before and after gut microbiome depletion

Data table header descriptions
VALUE NEQC-normalized signal
detection Pval

Data table
ID_REF VALUE detection Pval
ILMN_1212607 5.483265028 0.034793814
ILMN_1212612 4.593153391 0.528350515
ILMN_1212619 5.508829035 0.030927835
ILMN_1212628 4.467086613 0.833762887
ILMN_1212632 4.709871978 0.349226804
ILMN_1212636 10.52409567 0
ILMN_1212637 8.922268326 0
ILMN_1212645 4.624849412 0.484536082
ILMN_1212648 8.241581958 0
ILMN_1212653 5.808238912 0.00257732
ILMN_1212672 7.994663663 0
ILMN_1212682 5.925470958 0
ILMN_1212683 4.466751283 0.833762887
ILMN_1212685 4.561117398 0.612113402
ILMN_1212692 4.510154938 0.737113402
ILMN_1212693 6.809235444 0
ILMN_1212695 6.554531241 0
ILMN_1212698 4.409095698 0.93685567
ILMN_1212702 14.68386931 0
ILMN_1212703 6.721376104 0

Total number of rows: 25681

Table truncated, full table size 819 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap